Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C01
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 30 0.79
06_03_0411 - 20520823-20521674 29 1.0
01_06_1623 - 38716606-38717424 29 1.0
06_02_0006 + 10528423-10528768,10529132-10529201,10530820-105308... 29 1.8
02_01_0606 + 4543031-4543177,4543287-4543709,4543836-4543952,454... 29 1.8
07_03_0665 + 20470160-20471542 28 2.4
01_06_0893 - 32766994-32768841,32769596-32769782,32769860-327699... 28 2.4
11_01_0173 - 1392046-1392975 27 4.2
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 27 4.2
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076... 27 5.6
07_03_1118 + 24110714-24111280 27 5.6
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 27 5.6
02_05_0296 + 27639981-27640766 27 5.6
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020... 27 5.6
01_06_0573 + 30345935-30346429,30346523-30346690 27 5.6
10_01_0341 - 3758835-3759599,3760302-3760349 27 7.3
09_04_0132 - 14921798-14922616,14922736-14922900 27 7.3
09_02_0397 - 8549273-8549380,8549718-8549765,8549875-8549964,855... 27 7.3
07_03_1721 - 29023979-29025295 27 7.3
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 27 7.3
09_04_0644 + 19181335-19184424 26 9.7
01_06_1502 + 37807954-37808050,37808161-37808378,37808482-378090... 26 9.7
01_06_0699 - 31313967-31315106 26 9.7
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 29.9 bits (64), Expect = 0.79
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 246 GGTGLTPVHPHPCAHHQRAAPEV 314
GG G TP P P HH+RA EV
Sbjct: 38 GGAGPTPPPPPPPPHHRRARSEV 60
>06_03_0411 - 20520823-20521674
Length = 283
Score = 29.5 bits (63), Expect = 1.0
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Frame = +3
Query: 6 RKRIMLSSANPAVVTNAAQVALDTPPAISR----------PNRPNSLQVPLSLTPAQLHN 155
R+ ++LS ++PA V AA VA +PP S+ R P +L + +
Sbjct: 26 RRLVLLSPSSPAAV--AADVAPASPPVASQREEEEEEEEEEEREVKRSPPGTLRHRRTRS 83
Query: 156 NKALGNNKIAGIEISTPSNGIPFNFESLMEGGTGLTPV--HPHPCAHHQRAA 305
++A + G+E NG E+++ G GL P P A +RAA
Sbjct: 84 DEA-ATAALDGLEPLRIPNGHRARLETILSGKDGLAAALPQPQPMAERRRAA 134
>01_06_1623 - 38716606-38717424
Length = 272
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 15 IMLSSANPAVVTNAAQVALDTPPAISRPNRPNSLQVPLSLTPA 143
++ S +P T + L PP R RP S V L+ TP+
Sbjct: 17 VLQSIGHPIPATAVPDITLPVPPGERRTTRPESETVYLNFTPS 59
>06_02_0006 +
10528423-10528768,10529132-10529201,10530820-10530892,
10530973-10531053,10532124-10532239,10532339-10532630
Length = 325
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 75 TPPAISRP--NRPNSLQVPLSLTPAQLHNNKALGNN 176
TPP P N+ NS+ P L+PA HNN+A+ ++
Sbjct: 269 TPPISPSPVNNKSNSIS-PTPLSPAPDHNNRAVADD 303
>02_01_0606 +
4543031-4543177,4543287-4543709,4543836-4543952,
4544064-4544423
Length = 348
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/59 (28%), Positives = 22/59 (37%)
Frame = +3
Query: 132 LTPAQLHNNKALGNNKIAGIEISTPSNGIPFNFESLMEGGTGLTPVHPHPCAHHQRAAP 308
+ A +N GNN + E + S ESL + P HPH HH P
Sbjct: 88 MVTASANNGGGGGNNPSSTSEGGSVSPSRKRKSESLDDSPPPPPPPHPHAAPHHMHVMP 146
>07_03_0665 + 20470160-20471542
Length = 460
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 84 PAVCRERPAPRSSPRQGWPTTTL 16
P+ C PAP SP WP T L
Sbjct: 335 PSPCPPPPAPAPSPAMRWPATIL 357
>01_06_0893 - 32766994-32768841,32769596-32769782,32769860-32769987,
32770080-32770283,32770373-32770523,32771424-32771533,
32772534-32772903,32773031-32773189,32773719-32773848,
32773921-32773989,32774066-32774154,32774319-32774439,
32775878-32776148
Length = 1278
Score = 28.3 bits (60), Expect = 2.4
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 24 SSANPAVVTN-AAQVALDTPPAISRPNRPNSLQVPLSL---TPAQLHNNKALGNNKIAGI 191
S A A++ AA +++ PAISRP+ QVP S TPA + +AG
Sbjct: 901 SEAREAILPKKAAVLSVSQTPAISRPSSAPLFQVPRSTLPPTPAVQVPPMLSRSMTLAGR 960
Query: 192 EISTPSNGIP 221
+ PS +P
Sbjct: 961 SRNEPSPSVP 970
>11_01_0173 - 1392046-1392975
Length = 309
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 204 PSNGIPFNFESLMEGGTGLTPVHPHPCAHHQRAAPEVVSPD 326
P P +L+ G GL PHP H QR + PD
Sbjct: 17 PQQRTPTAPRTLLPAGGGLLLRRPHPPLHQQRRSRSSSRPD 57
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 27.5 bits (58), Expect = 4.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 267 VHPHPCAHHQRAAPEV 314
+HPHP AHH P V
Sbjct: 13 LHPHPHAHHHHGLPSV 28
>09_06_0309 -
22206812-22206884,22207008-22207103,22207531-22207619,
22207738-22207820,22207932-22208048,22208132-22208319,
22208430-22208500,22208570-22208782,22210022-22210081,
22210186-22210476,22210590-22211894
Length = 861
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 301 ARWWCAHGCGCTGV-NPVPPSIRLS 230
A+WW G GC + +P PP+I L+
Sbjct: 406 AQWWSEGGDGCIWLASPPPPAIALA 430
>07_03_1118 + 24110714-24111280
Length = 188
Score = 27.1 bits (57), Expect = 5.6
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +3
Query: 39 AVVTNAAQVALDTP-PAISRPNRPNSLQVPLSLTPAQLHNNKALGNNKIAGI-EISTPSN 212
A+ A ++ P PA++ P+R S + + +++ALG ++ A E P
Sbjct: 35 ALTAEAGKLPESNPKPAVAAPHRTFSCNYCMR----KFFSSQALGGHQNAHKRERCAPRK 90
Query: 213 GIPFNFESLMEGGTGLTPVHPHPCAHHQRAAP 308
F + LM GL+P P HH R P
Sbjct: 91 SHGFQQQHLM---VGLSPTAPSSFLHHMRVNP 119
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 325 SGETTSGAARW-WCAHGCGCTGVNPV 251
+G +G RW W HGC +NP+
Sbjct: 394 NGRADTGFLRWRWQPHGCDIPRLNPI 419
>02_05_0296 + 27639981-27640766
Length = 261
Score = 27.1 bits (57), Expect = 5.6
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = +3
Query: 3 TRKRIMLSSANPAVVTNAAQVALDTPPAISRPNRPNSLQVPLSLTPAQLHNNKALGNNKI 182
T R + +SA+PA + AA A + RP+ P P T A H+ +
Sbjct: 129 TASRPVPASASPADIRAAAAAAAAAAAHLERPHGPTGTAYP--ATAAAEHHQQQQQQQYG 186
Query: 183 AGIEISTPSNGIPFNFESLMEGGTG 257
+G + +G P MEGG G
Sbjct: 187 SGSPAADDVSGYP-----PMEGGIG 206
>01_06_1805 -
39999987-40000169,40000648-40000974,40001724-40002017,
40002112-40002231,40002714-40002776,40003150-40003310,
40003864-40004035
Length = 439
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 36 PAVVTNAAQVALDTPPAISRPNRPNSLQVP 125
PAVVT A A TPP P P Q+P
Sbjct: 10 PAVVTVTASAAAPTPPLPPPPPPPPPSQLP 39
>01_06_0573 + 30345935-30346429,30346523-30346690
Length = 220
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 14 NNVVVGQPCRGDERGAGRSRHTAGHLA 94
N V + RGD+ A R+R A HL+
Sbjct: 57 NRVAAARAARGDDFAASRARRIASHLS 83
>10_01_0341 - 3758835-3759599,3760302-3760349
Length = 270
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 12 RIMLSSANPAVVTNAAQVALDTPPAISRPNRPN 110
RI S +PA V A +D PPA S P N
Sbjct: 97 RIGQQSQSPAAVRTAQPKVVDPPPANSPPKNNN 129
>09_04_0132 - 14921798-14922616,14922736-14922900
Length = 327
Score = 26.6 bits (56), Expect = 7.3
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +3
Query: 195 ISTPSNGIPFNFESLMEGGTG--LTPVHPHPCAHHQRAAPEVVSPDAHNSLVSL*DEALA 368
IS S+G + GG + HP P + EV SP+ +LV AL
Sbjct: 248 ISINSSGPTITLDLTKNGGAVQVVEAAHPPPPPDLKEVCREVASPEFRTALVEQMASALT 307
Query: 369 AFPVFEALL 395
+ P F L
Sbjct: 308 SDPKFTGAL 316
>09_02_0397 -
8549273-8549380,8549718-8549765,8549875-8549964,
8550479-8550562,8551119-8551280,8551729-8551781,
8552763-8552807,8553840-8553876,8554212-8554320,
8554391-8554818,8554939-8555085
Length = 436
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 11 KNNVVVGQPCRGDERGAGRSRHTAGH 88
K N V PC DE+ A S ++GH
Sbjct: 127 KENTVSTNPCVSDEKAATNSNVSSGH 152
>07_03_1721 - 29023979-29025295
Length = 438
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 204 PSNGIPFNFESLMEGGTGLTPVHPHPC 284
P NG ++ + G +G+ P+HP PC
Sbjct: 217 PVNGAVSGHQNGIVGHSGVPPMHPIPC 243
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 279 PCAHHQRAAPEVVSPDAHNSLVSL*DEAL 365
P HH A E+VS D+H+S V +++L
Sbjct: 39 PPHHHHDAGAELVSGDSHHSAVRASNDSL 67
>09_04_0644 + 19181335-19184424
Length = 1029
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 261 TPVHPHPCAHHQRAAPEVVSPDAH 332
+P+ PCA H RA+ E V P +
Sbjct: 249 SPLDGQPCADHDRASGEGVQPQEY 272
>01_06_1502 +
37807954-37808050,37808161-37808378,37808482-37809011,
37809107-37809875
Length = 537
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 258 LTPVHPHPCAHHQRAAPEVVSPDAHNSLVSL 350
+ P HPHP + H AA SP SL L
Sbjct: 116 MQPNHPHPASCHDAAAACSPSPPPPPSLARL 146
>01_06_0699 - 31313967-31315106
Length = 379
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 286 AHGCGCTGVNPVPPSIRLSKLNGIP 212
AHGC C N PPS R G+P
Sbjct: 123 AHGCHCRPENFWPPSPRCPGCVGLP 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,001,654
Number of Sequences: 37544
Number of extensions: 173155
Number of successful extensions: 897
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -