Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C01
(401 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 29 1.1
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 28 3.3
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7) 28 3.3
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_46779| Best HMM Match : PP2C_C (HMM E-Value=1.7) 26 10.0
SB_5739| Best HMM Match : PAN (HMM E-Value=0.00013) 26 10.0
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 24 SSANPAVVTNAAQVALDTPPAISRPNRPNSLQVPLSLTPAQ 146
++ P T + TPPA + P +P + P + TP +
Sbjct: 135 TTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTK 175
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +3
Query: 24 SSANPAVVTNAAQVALDTPPAISRPNRPNSLQVPLSLTPAQ 146
++ P T TPPA + P +P + P + TP +
Sbjct: 79 TTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTPTK 119
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 24 SSANPAVVTNAAQVALDTPPAISRPNRPNSLQVPLSLTP 140
++ P T + TPPA + P +P + P + TP
Sbjct: 51 TTTTPPATTTPTKPTNTTPPATTTPTKPTTTTPPATTTP 89
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +3
Query: 24 SSANPAVVTNAAQVALDTPPAISRPNRPNSLQVPLSLTPAQ 146
++ P T + TPPA + P P + P + TP +
Sbjct: 65 TNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPTK 105
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 24 SSANPAVVTNAAQVALDTPPAISRPNRPNSLQVPLSLTPAQ 146
++ P T + TPPA + P +P + P + TP +
Sbjct: 93 TTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPGTTTPTK 133
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 24 SSANPAVVTNAAQVALDTPPAISRPNRPNSLQVPLSLTPAQ 146
++ P T + TPPA + P +P + P + TP +
Sbjct: 121 TTTTPPGTTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTK 161
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 24 SSANPAVVTNAAQVALDTPPAISRPNRPNSLQVPLSLTPAQ 146
++ P T + TPP + P +P + P + TP +
Sbjct: 107 TTTTPPATTTPTKPTTTTPPGTTTPTKPTTTTPPATTTPTK 147
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 33 NPAVVTNAAQVALDTPPAISRPNRPNSLQVPLSLTPAQLHNNKALGN 173
N V+N QV P+ S PN P S S+T + + + LGN
Sbjct: 685 NEPSVSNGDQVFFPPSPSHSNPNSPKSALKKSSVTTGRGASGEDLGN 731
>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
Length = 412
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 102 CWDARWPAVCRERPAPRSSPRQGWPTTTL 16
C++A W + RP P PR P TL
Sbjct: 115 CYEAYWKCMSDNRPKPSYRPRPSRPKPTL 143
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -3
Query: 102 CWDARWPAVCRERPAPRSSPRQGWPTTTL 16
C+ A W + RP P PR P TL
Sbjct: 225 CYKAYWKCMSDNRPKPSYRPRPSRPKPTL 253
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Frame = -2
Query: 289 CAHGCGC---TGVNPVPPSIR 236
C H CGC +G P PP+ R
Sbjct: 533 CTHACGCRDGSGARPEPPATR 553
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 42 VVTNAAQVALDTPPAISRPNRPNSLQVPLSLTPAQLHNNKAL 167
V T A AL TPP+ P S+ + LS LH+ +AL
Sbjct: 1707 VPTGALNTALPTPPSTLTACTPTSIILVLSPLENALHHIQAL 1748
>SB_46779| Best HMM Match : PP2C_C (HMM E-Value=1.7)
Length = 405
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 81 PAISRPNRPNSLQVPLSLTPAQLHNNKALGNN 176
P + +RP+SL +P P LHN L NN
Sbjct: 283 PFYLKKSRPSSLILPGQQPPKGLHNGDDLVNN 314
>SB_5739| Best HMM Match : PAN (HMM E-Value=0.00013)
Length = 126
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 340 RLLCASGETTSGAARWWCAHGCGCTGVN 257
+LL ++ A W C H GCT VN
Sbjct: 40 KLLKSARVVDDFACTWECTHAEGCTSVN 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,045,907
Number of Sequences: 59808
Number of extensions: 184241
Number of successful extensions: 586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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