Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C01
(401 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 31 0.31
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 31 0.31
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 28 2.2
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 3.8
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 3.8
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 27 5.0
U50193-4|AAP68917.1| 492|Caenorhabditis elegans Nuclear pore co... 27 6.7
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 27 6.7
Z77658-8|CAE17788.1| 79|Caenorhabditis elegans Hypothetical pr... 26 8.8
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 31.1 bits (67), Expect = 0.31
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 72 DTPPAISRPNRPNSLQV-PLSLTPAQLHNNKALGNN 176
D P+ SRPN PN+ Q+ PL+ TP + + ++++ N
Sbjct: 16 DEIPSTSRPNSPNNAQLYPLTSTPIRGNKSRSMKEN 51
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 31.1 bits (67), Expect = 0.31
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 72 DTPPAISRPNRPNSLQV-PLSLTPAQLHNNKALGNN 176
D P+ SRPN PN+ Q+ PL+ TP + + ++++ N
Sbjct: 16 DEIPSTSRPNSPNNAQLYPLTSTPIRGNKSRSMKEN 51
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 159 KALGNNKIAGIEISTPSNGIPFNFESLMEGG 251
KA KIA + +TP IPF FES + GG
Sbjct: 37 KADIREKIAKLYKTTPDTVIPFGFESKIGGG 67
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +3
Query: 105 PNSLQVPLSLTPAQLHNNKALGNNKIAGIEISTPSNGIPFNFESLMEGGTGLTPVHPHPC 284
PN L P +LTPA + + + K+ + +ESL + LT H HPC
Sbjct: 928 PNELMRPYTLTPA-IRPGQRIKPYKVPRTSRWYSCSWCDREYESLNQFVDHLTRFHTHPC 986
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +3
Query: 105 PNSLQVPLSLTPAQLHNNKALGNNKIAGIEISTPSNGIPFNFESLMEGGTGLTPVHPHPC 284
PN L P +LTPA + + + K+ + +ESL + LT H HPC
Sbjct: 928 PNELMRPYTLTPA-IRPGQRIKPYKVPRTSRWYSCSWCDREYESLNQFVDHLTRFHTHPC 986
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/52 (21%), Positives = 23/52 (44%)
Frame = +3
Query: 102 RPNSLQVPLSLTPAQLHNNKALGNNKIAGIEISTPSNGIPFNFESLMEGGTG 257
+PN +P+S+ P Q+ ++ + + + P G + M+G G
Sbjct: 145 QPNGQNIPMSIMPNQIPQHRIIHQGQPQQAQQQQPQQGNQLTHMNQMDGNVG 196
>U50193-4|AAP68917.1| 492|Caenorhabditis elegans Nuclear pore
complex protein protein10, isoform a protein.
Length = 492
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +3
Query: 18 MLSSANPAVVTNAAQVALD-------TPPAISRPNRPNSLQVPLSLTPAQLHNNKALGNN 176
++S +PAV T +A V D PP+++R R ++ +SLT +H + AL
Sbjct: 92 VMSDLSPAV-TRSADVTKDLNYTSKEAPPSLARGLRNSTFNPNMSLTNRSVHESSALDKT 150
Query: 177 KIAGIEIS 200
+ ++ S
Sbjct: 151 IDSALDAS 158
>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore
complex protein protein10, isoform b protein.
Length = 1189
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +3
Query: 18 MLSSANPAVVTNAAQVALD-------TPPAISRPNRPNSLQVPLSLTPAQLHNNKALGNN 176
++S +PAV T +A V D PP+++R R ++ +SLT +H + AL
Sbjct: 92 VMSDLSPAV-TRSADVTKDLNYTSKEAPPSLARGLRNSTFNPNMSLTNRSVHESSALDKT 150
Query: 177 KIAGIEIS 200
+ ++ S
Sbjct: 151 IDSALDAS 158
>Z77658-8|CAE17788.1| 79|Caenorhabditis elegans Hypothetical
protein F14D7.11 protein.
Length = 79
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 210 CSGYLSRCLLFCCYRALCCYV 148
C +S C LF C+ LCC V
Sbjct: 57 CQCCVSCCSLFTCWAQLCCAV 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,060,044
Number of Sequences: 27780
Number of extensions: 131396
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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