Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C01
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   0.99 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   5.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 94  REMAGGVSRATCAAFVTTAGLAD 26
           + M  G S+A CA  +  AG+ +
Sbjct: 100 KNMITGTSQADCAVLIVAAGIGE 122


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 195 ISTPSNGIPFN---FESLMEGGTGLTPVHPHPCAHHQ 296
           ++   N +PF+    ES   GG+  TPV P P    Q
Sbjct: 133 LAAGGNHLPFHEKLVESFPRGGSLPTPVTPTPTTVQQ 169


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 81  AVCRERPAPRSSPRQGWPTTTLFFSS 4
           + CR+ P     P  GW    + FS+
Sbjct: 640 SACRDIPEEFLRPESGWAIGAMSFSA 665


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 398 SEQRLEDREGGERLVSETDEAVV 330
           +  R  DR  G   VSE+DE  V
Sbjct: 188 ASSRNSDRSAGSPSVSESDEVDV 210


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 210 NGIPFNFESLMEGGTGLTP 266
           + +PFNF+ + +  +  TP
Sbjct: 315 SNVPFNFKFITDANSSSTP 333


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II
          large subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 99 WDARWPAVCRERPAPRSSPRQ 37
          WD + P  C  +P P  + +Q
Sbjct: 31 WDGKMPQPCILKPKPLWTGKQ 51


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -3

Query: 105 VCWDARWPAVC 73
           +CW    PA+C
Sbjct: 493 ICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -3

Query: 105 VCWDARWPAVC 73
           +CW    PA+C
Sbjct: 546 ICWTITTPAIC 556


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 264  PVHPHPCAHHQRAAPEVVSPDAHN 335
            P+   PC H        ++PD HN
Sbjct: 1460 PLRLGPCWHAVMTTYPRINPDNHN 1483


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 256 PVPPSIRLSKLNGIPLL 206
           P+PP   +S ++G+P L
Sbjct: 416 PMPPIPNMSNMSGMPPL 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,945
Number of Sequences: 438
Number of extensions: 1806
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)