Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B24
         (206 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2IFB2 Cluster: Acyltransferase 3; n=1; Anaeromyxobacte...    32   2.2  
UniRef50_Q27W07 Cluster: Smad4; n=2; Nematostella vectensis|Rep:...    31   5.1  
UniRef50_Q6MMQ4 Cluster: TonB-dependent receptor precursor; n=1;...    30   9.0  
UniRef50_Q234J7 Cluster: Putative uncharacterized protein; n=2; ...    30   9.0  

>UniRef50_Q2IFB2 Cluster: Acyltransferase 3; n=1; Anaeromyxobacter
           dehalogenans 2CP-C|Rep: Acyltransferase 3 -
           Anaeromyxobacter dehalogenans (strain 2CP-C)
          Length = 407

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 8   GIRHEARRTFVKWLTNIGPCEARATKSSTAFRPTRTYHVQKIL 136
           G R E RR  + WL  +G        ++  F P  T+HVQ +L
Sbjct: 9   GYRSEPRRADLDWLRVLGMLAVFLVHAAEPFNPWDTWHVQSVL 51


>UniRef50_Q27W07 Cluster: Smad4; n=2; Nematostella vectensis|Rep:
           Smad4 - Nematostella vectensis
          Length = 218

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 80  TKSSTAFRPTRTYHVQKILYYSEEITRNKAY 172
           T++  AFR TR++HV   LY+S  I+  +AY
Sbjct: 171 TETRKAFRVTRSHHVYTHLYFSPYISTPQAY 201


>UniRef50_Q6MMQ4 Cluster: TonB-dependent receptor precursor; n=1;
           Bdellovibrio bacteriovorus|Rep: TonB-dependent receptor
           precursor - Bdellovibrio bacteriovorus
          Length = 709

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 15  GTRRDEHLSSGSLISGLVKPEQLKVQRLLGRHAHTMYKK 131
           G R +EH      +  L+K +  K++ +LG HAH  Y K
Sbjct: 323 GVRTEEHNDRFVSVENLLKFQNEKLKNVLGFHAHDYYLK 361


>UniRef50_Q234J7 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 322

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 104 PTRTYHVQKILYYSEEITRNKAY 172
           P   Y++QK+  Y EE+T NK Y
Sbjct: 118 PVNQYYIQKLYKYEEELTVNKRY 140


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,770,397
Number of Sequences: 1657284
Number of extensions: 2921373
Number of successful extensions: 7106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7106
length of database: 575,637,011
effective HSP length: 47
effective length of database: 497,744,663
effective search space used: 10452637923
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)