Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B24
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    24   2.4  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    24   3.2  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    23   5.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   5.5  

>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 76  SGFTRPDISEPLDKCSSRLVPNSC 5
           SG +RP+I+  + +C  +L  N+C
Sbjct: 237 SGESRPEIAYAIHECLLKLKKNAC 260


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 203 YTSVLSRYIFSKLYYA*SPRYNTIFFVHGM 114
           ++   +  I SKL+ + SP + T+ F HG+
Sbjct: 155 FSKTSAEEIASKLFSSVSPTHETLQFDHGL 184


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 80  TKSSTAFRPTRTYHVQKILYY 142
           TK    F PT   HV +I+YY
Sbjct: 409 TKVPLHFLPTWLRHVSRIVYY 429


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 196 LCFLDTYLVSFITRNLLAIIQYFLYMVCACRP 101
           L FLDTYL   I   + ++++ F+  +    P
Sbjct: 752 LFFLDTYLWYIIFNTIFSVLRSFVLGISILTP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 820,947
Number of Sequences: 5004
Number of extensions: 12986
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)