Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B24
         (206 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0931 - 28912700-28913056,28913245-28913319,28913424-289134...    26   4.8  
05_06_0134 + 25912474-25912561,25912678-25913230,25914063-259145...    25   8.4  
01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255     25   8.4  

>03_05_0931 -
           28912700-28913056,28913245-28913319,28913424-28913497,
           28913604-28913691,28913785-28913936,28914050-28914209,
           28914303-28914458,28914566-28914784,28915390-28915650,
           28917183-28917389,28917488-28917619
          Length = 626

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 24  RDEHLSSGSLISGLVKPEQLKVQRLLGRHAHTMYKKYCIIARRLRV 161
           R+E LSSG L    +K  + +V+RL    A  M  K  ++ RRL +
Sbjct: 309 REEALSSGVLSIATIKKTEEEVERLTRLKAGRM--KELVLKRRLEL 352


>05_06_0134 +
           25912474-25912561,25912678-25913230,25914063-25914556,
           25914804-25914942,25915511-25915582,25915671-25915742,
           25917202-25917282,25917385-25917545,25917626-25917894,
           25917996-25918122,25918193-25918261,25918366-25918558,
           25918605-25919046
          Length = 919

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 12  FGTRRDEHLSSGSLIS--GLVKPEQLKVQRLLGRHAHTMYK 128
           F      H+S+  L+   G V PE++ + RL+G      Y+
Sbjct: 750 FNPENGTHVSTNKLVGTPGYVDPEEILIVRLIGTDQMRRYQ 790


>01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255
          Length = 190

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 199 HLCFLDTYLVSFITRNLLAIIQYFLYMVCACRPKSR 92
           H  FLD    S  + N + + Q+ LY+V A RP  R
Sbjct: 146 HRIFLD--YTSLFSGNYVLLRQFSLYVVLAPRPSRR 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,130,016
Number of Sequences: 37544
Number of extensions: 78953
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)