Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B24
(206 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024881-4|AAK71412.2| 314|Caenorhabditis elegans Serpentine re... 29 0.60
U39994-1|AAB37019.1| 326|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z70034-13|CAC44293.1| 350|Caenorhabditis elegans Hypothetical p... 27 1.4
Z49910-10|CAC44291.1| 350|Caenorhabditis elegans Hypothetical p... 27 1.4
Z83235-1|CAB05775.1| 174|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr... 26 4.2
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 26 4.2
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 26 4.2
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein. 26 4.2
Z70034-14|CAC44294.1| 356|Caenorhabditis elegans Hypothetical p... 25 9.7
Z49910-11|CAC44292.1| 356|Caenorhabditis elegans Hypothetical p... 25 9.7
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 25 9.7
AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical ... 25 9.7
AF016672-4|AAD47126.1| 968|Caenorhabditis elegans Hypothetical ... 25 9.7
>AC024881-4|AAK71412.2| 314|Caenorhabditis elegans Serpentine
receptor, class sx protein5 protein.
Length = 314
Score = 28.7 bits (61), Expect = 0.60
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -3
Query: 159 RVISSL*YNIFCTWYVRVGLKAVELLVARASQGPILVSHLTNV 31
R+ S+ + IF TWY+ GL A +L VA GP L+ ++N+
Sbjct: 209 RLKVSIMFFIF-TWYI--GLLAADLFVALGFTGPTLIFMMSNL 248
>U39994-1|AAB37019.1| 326|Caenorhabditis elegans Hypothetical
protein C48C5.3 protein.
Length = 326
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 196 LCFLDTYLVSFITRNLLAIIQYFLYMVCAC 107
+C T+L + N L +YFL + C C
Sbjct: 10 ICIESTFLTMRVMENYLKSFEYFLLVSCVC 39
>Z70034-13|CAC44293.1| 350|Caenorhabditis elegans Hypothetical
protein C18E9.11a protein.
Length = 350
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 199 HLCFLDTYLVSFITRNLLAI 140
HLCF++T L+S IT +AI
Sbjct: 12 HLCFVNTELISVITGTTIAI 31
>Z49910-10|CAC44291.1| 350|Caenorhabditis elegans Hypothetical
protein C18E9.11a protein.
Length = 350
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 199 HLCFLDTYLVSFITRNLLAI 140
HLCF++T L+S IT +AI
Sbjct: 12 HLCFVNTELISVITGTTIAI 31
>Z83235-1|CAB05775.1| 174|Caenorhabditis elegans Hypothetical
protein K10C3.2 protein.
Length = 174
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 36 LSSGSLISGLVKPEQLKVQRLLGRHAHT 119
+SSG + +G + PE+ + Q L+G+ A T
Sbjct: 10 VSSGEIATGALSPEKQQEQELMGKLAAT 37
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 47 LTNIGPCEARATKSSTA-FRPTRTYHVQKILYYSE 148
+ +G CE RAT TA F P T V YS+
Sbjct: 1887 VNQLGTCEIRATDRDTAEFGPPFTMEVSPSFKYSQ 1921
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 47 LTNIGPCEARATKSSTA-FRPTRTYHVQKILYYSE 148
+ +G CE RAT TA F P T V YS+
Sbjct: 1887 VNQLGTCEIRATDRDTAEFGPPFTMEVSPSFKYSQ 1921
>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical
protein W02B9.1a protein.
Length = 1223
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 47 LTNIGPCEARATKSSTA-FRPTRTYHVQKILYYSE 148
+ +G CE RAT TA F P T V YS+
Sbjct: 190 VNQLGTCEIRATDRDTAEFGPPFTMEVSPSFKYSQ 224
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 47 LTNIGPCEARATKSSTA-FRPTRTYHVQKILYYSE 148
+ +G CE RAT TA F P T V YS+
Sbjct: 1887 VNQLGTCEIRATDRDTAEFGPPFTMEVSPSFKYSQ 1921
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 47 LTNIGPCEARATKSSTA-FRPTRTYHVQKILYYSE 148
+ +G CE RAT TA F P T V YS+
Sbjct: 1887 VNQLGTCEIRATDRDTAEFGPPFTMEVSPSFKYSQ 1921
>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
Length = 1223
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 47 LTNIGPCEARATKSSTA-FRPTRTYHVQKILYYSE 148
+ +G CE RAT TA F P T V YS+
Sbjct: 190 VNQLGTCEIRATDRDTAEFGPPFTMEVSPSFKYSQ 224
>Z70034-14|CAC44294.1| 356|Caenorhabditis elegans Hypothetical
protein C18E9.11b protein.
Length = 356
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 199 HLCFLDTYLVSFIT 158
HLCF++T L+S IT
Sbjct: 12 HLCFVNTELISVIT 25
>Z49910-11|CAC44292.1| 356|Caenorhabditis elegans Hypothetical
protein C18E9.11b protein.
Length = 356
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 199 HLCFLDTYLVSFIT 158
HLCF++T L+S IT
Sbjct: 12 HLCFVNTELISVIT 25
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 142 IIQYFLYMVCA-CRPKSR*TFSCSGFTRPDISEPLDKCS 29
++Q F+ V + C P FS S F +P P D CS
Sbjct: 38 LLQIFVISVVSQCPPGLTPLFSNSNFNQPLTCTPQDACS 76
>AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical
protein F56D12.6b protein.
Length = 951
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/31 (22%), Positives = 17/31 (54%)
Frame = +3
Query: 39 SSGSLISGLVKPEQLKVQRLLGRHAHTMYKK 131
S+G+L+ + +++ + + H H +KK
Sbjct: 657 STGNLLQATISEQRIPLAMAINEHVHVWFKK 687
>AF016672-4|AAD47126.1| 968|Caenorhabditis elegans Hypothetical
protein F56D12.6a protein.
Length = 968
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/31 (22%), Positives = 17/31 (54%)
Frame = +3
Query: 39 SSGSLISGLVKPEQLKVQRLLGRHAHTMYKK 131
S+G+L+ + +++ + + H H +KK
Sbjct: 674 STGNLLQATISEQRIPLAMAINEHVHVWFKK 704
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,540,784
Number of Sequences: 27780
Number of extensions: 73375
Number of successful extensions: 164
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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