Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B23
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 186 2e-48
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 153 1e-38
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 92 3e-20
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 73 1e-14
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 48 8e-07
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 46 3e-06
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 38 5e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 38 9e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 9e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 37 0.002
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 36 0.003
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 34 0.011
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 34 0.011
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 33 0.014
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.014
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 32 0.033
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 32 0.044
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 31 0.077
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 31 0.10
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 0.94
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 27 0.94
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 0.94
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 1.2
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 2.2
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 2.2
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 26 2.2
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 5.0
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 5.0
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 5.0
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 25 6.7
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 6.7
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 25 6.7
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 24 8.8
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 24 8.8
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 186 bits (452), Expect = 2e-48
Identities = 86/99 (86%), Positives = 91/99 (91%)
Frame = +3
Query: 138 GICLQIYLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 317
G+ + LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+NI
Sbjct: 2 GLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNI 61
Query: 318 SFTVWDVGGQDKIRPLWRHYFQNTQGLISVVDSNDRERI 434
SFTVWDVGGQDKIRPLWRHYFQNTQG+I VVDSNDRERI
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERI 100
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 153 bits (370), Expect = 1e-38
Identities = 71/89 (79%), Positives = 75/89 (84%)
Frame = +3
Query: 168 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 347
LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F VWDVGGQ
Sbjct: 16 LFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQ 75
Query: 348 DKIRPLWRHYFQNTQGLISVVDSNDRERI 434
DKIRPLWRHYF T+GLI VVDS D RI
Sbjct: 76 DKIRPLWRHYFTGTKGLIFVVDSADSNRI 104
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 92.3 bits (219), Expect = 3e-20
Identities = 42/87 (48%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Frame = +3
Query: 177 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 353
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 354 IRPLWRHYFQNTQGLISVVDSNDRERI 434
+R W++YF++T+ +I VVDS D R+
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRL 99
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 73.3 bits (172), Expect = 1e-14
Identities = 34/85 (40%), Positives = 50/85 (58%)
Frame = +3
Query: 180 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 359
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 360 PLWRHYFQNTQGLISVVDSNDRERI 434
LWR YF G++ +VD D ER+
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERL 103
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 47.6 bits (108), Expect = 8e-07
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +3
Query: 186 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 350
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 351 KIRPLWRHYFQNTQGLISVVDSNDRE 428
+ R + Y++ G++ + D D++
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKK 95
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 46.0 bits (104), Expect = 3e-06
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +3
Query: 189 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 353
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 354 IRPLWRHYFQNTQGLISVVDSNDRE 428
R + Y++ G+I V D D++
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQD 94
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 38.3 bits (85), Expect = 5e-04
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +3
Query: 189 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 353
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 354 IRPLWRHYFQNTQGLISVVDSNDR 425
+ L Y+ Q I + D R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 37.5 bits (83), Expect = 9e-04
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 189 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 353
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 354 IRPLWRHYFQNTQGLISVVD 413
R + Y++ G + V D
Sbjct: 72 YRAITSAYYRGAVGALIVYD 91
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 37.5 bits (83), Expect = 9e-04
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 303 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLISVVDSNDRE 428
+ K I +WD GQ+K R + R+Y++ G + V D +++
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKD 99
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 36.7 bits (81), Expect = 0.002
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Frame = +3
Query: 162 NGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFT 326
N F ++ +++ +G + GKT+++ + + T TIG + + +E + +
Sbjct: 4 NYSFSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQ 63
Query: 327 VWDVGGQDKIRPLWRHYFQNTQGLISVVD 413
+WD GQ++ R L Y +++ I V D
Sbjct: 64 LWDTAGQERFRSLIPSYIRDSSVAIIVYD 92
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.9 bits (79), Expect = 0.003
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = +3
Query: 189 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 347
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 348 DKIRPL 365
+++RP+
Sbjct: 70 ERLRPM 75
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 33.9 bits (74), Expect = 0.011
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 270 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLISVV 410
I T G + ET + +DVGGQ R W H F+N L+ +V
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLV 265
Score = 27.9 bits (59), Expect = 0.71
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 162 NGLFGKKEMRILMVGLDAAGKTTILYKLKL 251
N G ++++L++G +GKTTI+ +++L
Sbjct: 67 NSTSGGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 33.9 bits (74), Expect = 0.011
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +3
Query: 186 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQ 347
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 33.5 bits (73), Expect = 0.014
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 276 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLISVVDSNDRER 431
T+G + + ++ ++DVGGQ R W + F+N +I V ND ++
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDK 230
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.014
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +3
Query: 189 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 347
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 348 DKIRPL 365
D++RPL
Sbjct: 68 DRLRPL 73
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 32.3 bits (70), Expect = 0.033
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +3
Query: 174 GKKE--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 332
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 333 DVGGQDKIRPLWRHYFQNTQGLISVVDSND 422
D GQ++ + L +++ + V D N+
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNN 92
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.9 bits (69), Expect = 0.044
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Frame = +3
Query: 189 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 350
++L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 351 KIRPLW-----RHYFQNTQGLISVVDSNDRE 428
+ H F+N Q LI V D RE
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 31.1 bits (67), Expect = 0.077
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +3
Query: 189 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 350
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 351 KIRPLWRHYFQNTQGLISVVD 413
+ + L Y++N I V D
Sbjct: 76 RYKSLAPMYYRNANCAIVVYD 96
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 30.7 bits (66), Expect = 0.10
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Frame = +3
Query: 159 LNGLFGKKEM----RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKN 314
++ FG K+ +I+++G AAGKT++L G PTI N V+ +
Sbjct: 1 MSSCFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNS 60
Query: 315 ISFTVWDVGGQDKIRPLWRHYFQNTQGLI--SVVDSND 422
I ++WD GQ++ L + +T ++ VDS D
Sbjct: 61 IELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRD 98
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 0.94
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 371 PPQWSDFVLTAYIPHSETNVFVFY 300
PP+ SDF++ ++ H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 27.5 bits (58), Expect = 0.94
Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 186 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 350
++++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 351 KIRPLWRHYFQNTQGLISVVDSND 422
+ + L +++ + V + N+
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNN 92
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 0.94
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 171 FGKKEMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 335
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 177 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 308
KK + ++G +GKT++ +L E TT+P+I N +Y
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY 78
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 192 ILMVGLDAAGKTTILYKLKL 251
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 180 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 281
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 404 RNKTLC-ILEIMPPQWSDFVLTAYIPHSETNVFVFYSLHIEPNS 276
R+K + +LEIM + S +++ Y+ H T V + LH P +
Sbjct: 332 RHKNIVRLLEIMVEKSSVYMVFEYMDHDLTGVLLNSQLHFTPGN 375
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 177 KKEMRILMVGLDAAGKTTILYKL 245
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 177 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 284
KK++ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 258 IVTTIPTIGFNVETVEYKNISFTVW 332
I T P F+++ EY N+ VW
Sbjct: 237 IYFTFPVNSFSIDGCEYNNVKALVW 261
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 407 YRNKTLCILEIMPPQWSDFVLTAYIP 330
YR + L IL ++PP+ F + Y+P
Sbjct: 423 YRFRQLDILGLLPPRLRRFFVDDYVP 448
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 224 FTSSIQTNHQYSHFFFAKKAV*INLQTYSPFL 129
F SSI +H+YS FF + N + S FL
Sbjct: 366 FLSSISPSHRYSVAFFLRSLTSENDELSSKFL 397
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 150 QIYLNGLFGKKEMRILMVGLDAAGKTTI 233
Q L ++GK+ + I+ +G AGK+T+
Sbjct: 227 QELLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 180 KEMRILMVGLDAAGKTTILYKLKLGE 257
K R L+VG + AGK+T+L KL G+
Sbjct: 29 KGSRTLLVGANGAGKSTLL-KLLSGK 53
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 301 TVSTLNPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFL 176
T T+ P V + ++S N +L VVL + + +IN+ L
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,845
Number of Sequences: 5004
Number of extensions: 43748
Number of successful extensions: 153
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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