Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B23
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.48 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   0.85 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   0.85 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -1

Query: 343 PPTSHTVKLMFLYSTVSTLNPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPK 170
           PPTS TV L+  Y   + +   + +VVTI+     +R  V    ++    + I  LP+
Sbjct: 290 PPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPR 347


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -3

Query: 380 EIMPPQWSDFVLTAYIPHSETNVFV----FYSLHIEPNSGNCCNNF 255
           ++ P   S+F +   +   E  + V       LH++P   NCC ++
Sbjct: 359 QVEPDNSSNFAMKPLVRQPEDTMSVDRMQHCELHMQPRKKNCCRSW 404


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -3

Query: 380 EIMPPQWSDFVLTAYIPHSETNVFV----FYSLHIEPNSGNCCNNF 255
           ++ P   S+F +   +   E  + V       LH++P   NCC ++
Sbjct: 359 QVEPDNSSNFAMKPLVRQPEDTMSVDRMQHCELHMQPRKKNCCRSW 404


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 212 CCW*NYNSIQTQIR 253
           CCW  +N  Q QIR
Sbjct: 605 CCWHCFNCTQYQIR 618


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 333 DVGGQDKIRPLWRH 374
           DV   DK+ PL+ H
Sbjct: 267 DVSSNDKVHPLYGH 280


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 343 PPTSHTVKLMFLYSTVSTLNPIVGIVVTI 257
           PPTS  + L+  Y   + +   V I+VT+
Sbjct: 287 PPTSLVLPLIAKYLLFTFIMNTVSILVTV 315


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 126 LCE*YFSEAKVFRIKKKLHSENSI 55
           LC   F   K   +  K HS++S+
Sbjct: 264 LCHETFGSKKTMELHIKTHSDSSV 287


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 148 KHIPHFYAL 122
           KHIPHF +L
Sbjct: 250 KHIPHFTSL 258


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 148 KHIPHFYAL 122
           KHIPHF +L
Sbjct: 250 KHIPHFTSL 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,888
Number of Sequences: 438
Number of extensions: 3147
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)