Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B22
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    79   4e-16
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.010
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    27   1.2  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   2.0  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   2.0  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   2.7  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   3.6  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   3.6  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    25   3.6  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   4.7  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   4.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   4.7  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 78.6 bits (185), Expect = 4e-16
 Identities = 43/115 (37%), Positives = 66/115 (57%)
 Frame = +1

Query: 73  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTG 252
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + ++D+FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60

Query: 253 QCRYGLFDFDYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 417
            CRY ++DF++ +  +G      + K+  +SW PD A +K KM+YSSS D L+++
Sbjct: 61  DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRA 109


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +1

Query: 316 SKKQKLFLMSWCPDTAKVKKKMLYSSS 396
           SKK  L L+S+ P+ A V++KMLY+SS
Sbjct: 76  SKKNLLQLISYVPENANVRRKMLYASS 102



 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 328 KLFLMSWCPDTAKVKKKMLYSSS 396
           K+  +  CP  A VK +M+YSSS
Sbjct: 244 KILFIYICPMQATVKHRMVYSSS 266


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +1

Query: 100 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTGQCRYGLFDF 279
           K + + ++ + K ++     +D K+ D + +  +  EY SF ++L+   TGQ  Y   DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 174  LFLVANVEHHVAVFLILFY--FFVCRFASVRYCHTRRHFLMLKHVKIAPL 31
            +F++A + +   +F+IL    FF+ R+  V Y  T R    L  V  +PL
Sbjct: 1031 VFVLAVICYSSPMFMILIVPLFFLYRYNQVYYTQTSRELKRLDSVTRSPL 1080


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 347 HDIRNNFCFLLASDVPWH*CV*SKSKRPYLHCPVPPFCRSSRKLSYSALRPPTV 186
           HD+ ++  +++ S   +H C  ++S  P+ H   PP            LRPP V
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSH--HPPLHNPLPVSCQPVLRPPPV 158


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 79  VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGR 201
           VT  D  KT  +  +K  KH+ V  YIR  K +D   +GGR
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVD---IGGR 149


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 237 LQVFEKAIVFGITSADGFDVDLFLVANVEHHVAVFLILFYFFVCRFASVRYCHTRRHFLM 58
           +QV EK +V G      F   L       H + +FL+   ++ CR  SVR     R  L+
Sbjct: 271 VQVGEKCVVMGQVVPVNFKFTLLGEVKF-HKLRLFLMERRYYYCRQRSVRRKEKTRQLLL 329


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 113 KK*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRR 241
           K+ + + N+A    TFA      SKP+  V+P++  F+ T  R
Sbjct: 264 KRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPSS-PFTSTLSR 305


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 393 ARVQHLLLDLGGVWAPRH*EQFLFLARLRCTLALMRVVKIEETISALSG 247
           A ++ LLL +     PR  ++ +   R+ CT  L  V ++EE  +   G
Sbjct: 93  ASLEELLLKIFN--GPRSDKELILTIRIMCTFCLASVFQVEELWTKTEG 139


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -1

Query: 367 PW--RCLGTTTLGTISVSCSPPMYPGTDAC 284
           PW  +C+    LG I+  CS P   G   C
Sbjct: 122 PWTKKCMNCGLLGHIAARCSEPRKRGPRVC 151


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 82  TVSDACKTTYEEIKKDKKHRYV 147
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 414  FLQRIEGARVQHLL 373
            F+QRI G R++HLL
Sbjct: 1202 FVQRIRGGRIRHLL 1215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,855
Number of Sequences: 5004
Number of extensions: 30523
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)