Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B22
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 94 3e-20
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 94 3e-20
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 71 3e-13
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 71 3e-13
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 71 3e-13
U88169-5|AAB42235.2| 367|Caenorhabditis elegans Hypothetical pr... 28 3.1
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 28 3.1
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF003388-2|AAB54267.2| 167|Caenorhabditis elegans Hypothetical ... 26 9.5
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 94.3 bits (224), Expect = 3e-20
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Frame = +1
Query: 67 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 240
MASGV V +CK Y+ + +H Y++F I +++ I VE VG +NA Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 241 -GGTGQCRYGLFDFDYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 417
+CRY D + T Q QG S K+ + +CPD A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 94.3 bits (224), Expect = 3e-20
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Frame = +1
Query: 67 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 240
MASGV V +CK Y+ + +H Y++F I +++ I VE VG +NA Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 241 -GGTGQCRYGLFDFDYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 417
+CRY D + T Q QG S K+ + +CPD A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 70.9 bits (166), Expect = 3e-13
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 17/134 (12%)
Frame = +1
Query: 67 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 201
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 202 NAEYDSFLEDLQK--GGTGQCRYGLFDFDYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 375
A +D F+ED++ CRY +FDF +T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 376 KMLYSSSFDALKKS 417
KM+Y+SS A+K S
Sbjct: 119 KMVYASSAAAIKTS 132
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 70.9 bits (166), Expect = 3e-13
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 17/134 (12%)
Frame = +1
Query: 67 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 201
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 202 NAEYDSFLEDLQK--GGTGQCRYGLFDFDYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 375
A +D F+ED++ CRY +FDF +T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 376 KMLYSSSFDALKKS 417
KM+Y+SS A+K S
Sbjct: 119 KMVYASSAAAIKTS 132
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 70.9 bits (166), Expect = 3e-13
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 17/134 (12%)
Frame = +1
Query: 67 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 201
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 202 NAEYDSFLEDLQK--GGTGQCRYGLFDFDYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 375
A +D F+ED++ CRY +FDF +T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 376 KMLYSSSFDALKKS 417
KM+Y+SS A+K S
Sbjct: 119 KMVYASSAAAIKTS 132
Score = 36.7 bits (81), Expect = 0.007
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 292 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 417
Q SE S K+ L++ CPD A V+++MLY+SS ALK S
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKAS 180
>U88169-5|AAB42235.2| 367|Caenorhabditis elegans Hypothetical
protein T03F1.7 protein.
Length = 367
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 229 DLQKGGTGQC-RY-GLFDFDYTHQCQGTSEASKK 324
DL +G QC RY GLF +DYT++ + SK+
Sbjct: 302 DLAEGYNEQCIRYPGLFLYDYTNKLHNLEDLSKE 335
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 283 YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 387
+ H G+ E + +F S PD+ K KKK+LY
Sbjct: 161 FIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 361 RCLGTTTLGTISVSCSPPMYPGTDACSQNRR 269
RC TT I C + PG C+QNR+
Sbjct: 43 RCACLTTYVEIDSYCWRKINPGESGCTQNRQ 73
>AF003388-2|AAB54267.2| 167|Caenorhabditis elegans Hypothetical
protein R10F2.4 protein.
Length = 167
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 116 K*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRRAAPDNA 259
K KR + + +T R RS S+P P T A + A P A
Sbjct: 107 KVKRSESAGSSTTTTKPRTRSGSRPGTSSRPGTNASERATSAAGPKRA 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,484,525
Number of Sequences: 27780
Number of extensions: 182877
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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