Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B21
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   159   2e-39
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   142   1e-34
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   118   2e-27
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    98   3e-21
AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.    31   0.58 
AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.    31   0.58 
AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cel...    31   0.58 
AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cel...    31   0.58 
Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  159 bits (385), Expect = 2e-39
 Identities = 72/130 (55%), Positives = 91/130 (70%)
 Frame = +3

Query: 177 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 356
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 357 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPTPTRPNTLRAGTNTVTKLVEKK 536
           +A+  FK+L+KYRPE+                    E    RPNT+R G NT+T+LVE +
Sbjct: 92  SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETR 151

Query: 537 KAQLVVIAHD 566
           +AQLV+IAHD
Sbjct: 152 RAQLVLIAHD 161


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  142 bits (345), Expect = 1e-34
 Identities = 73/130 (56%), Positives = 92/130 (70%)
 Frame = +3

Query: 177 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 356
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 357 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPTPTRPNTLRAGTNTVTKLVEKK 536
           +A+  FK+L+KYRPE+                    E T  RPNT+R G NT+T+LVE +
Sbjct: 92  SARQAFKLLDKYRPEST-------------------EVT-KRPNTVRHGVNTITRLVETR 131

Query: 537 KAQLVVIAHD 566
           +AQLV+IAHD
Sbjct: 132 RAQLVLIAHD 141


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  118 bits (285), Expect = 2e-27
 Identities = 51/76 (67%), Positives = 64/76 (84%)
 Frame = +3

Query: 177 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 356
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194

Query: 357 TAKGLFKILEKYRPET 404
           +A+  FK+L+KYRPE+
Sbjct: 195 SARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = +3

Query: 177 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 350
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.
          Length = 691

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 107 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 286
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 31  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88

Query: 287 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 382
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 89  GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120


>AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.
          Length = 728

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 107 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 286
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 68  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125

Query: 287 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 382
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157


>AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform b protein.
          Length = 512

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 107 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 286
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 68  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125

Query: 287 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 382
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157


>AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform a protein.
          Length = 728

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 107 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 286
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 68  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125

Query: 287 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 382
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157


>Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical
           protein W05B10.5 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 232 LVGWMSWPIAKF--FVLFSNRGFTIF 161
           LVGW +W I  F   +L SNR F +F
Sbjct: 97  LVGWFAWCIGPFSQVLLTSNRIFAVF 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,514,103
Number of Sequences: 27780
Number of extensions: 208869
Number of successful extensions: 467
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)