Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B19
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.3  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   1.3  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    26   2.3  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    25   5.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    24   7.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   7.1  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    24   7.1  

>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 13  YVRKELRIDRFLKLIICTCEFNIVRIYNMHR 105
           Y RK  RI R +  I   CE   V+IYN+ R
Sbjct: 17  YRRKTARIRRKVSEIEKECEMYAVKIYNVER 47


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 307 TISHKAPPRLHDI--DCQIRKFNELKENDCYMTDRDPAKNSQLY*TTTNSTAFKHP 146
           ++ H  PP   +I  D + +K  ELK    ++ + DP K ++       S+A K P
Sbjct: 157 SLQHALPPEHRNIWFDMEKQKKEELKNKHSWLYNEDPFKAAKELQAARASSAAKPP 212


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 209 RPRQKLPVILNNDQFNSIQTS*DRIIIRH 123
           R R++ PV++ N   N I +  DR+++RH
Sbjct: 103 RGRKEKPVVIVNAAENDIGSFKDRLLLRH 131


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 307 TISHKAPPRLHDIDCQIRKFNELKE 233
           T+SH      ++++  IRK NEL+E
Sbjct: 48  TLSHTQEQEFNELNKLIRKINELQE 72


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 159 HSNILGPNYY*AYYDRFNAMHIINSDYIK 73
           HSN+L P +   Y+ RF+   +   DY++
Sbjct: 639 HSNLLNPEWLMNYFSRFSPDEVY--DYLR 665


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 214 LSCSSRFLLIH*TCVFDNLYHVILVALCVI 303
           LS S  F +IH   + DN+ H+ L   C +
Sbjct: 294 LSSSDVFTIIHLLQIPDNIKHIELQCFCKV 323


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 241 LKENDCYMTDRDPAKNSQLY 182
           L EN C + D +PAK+ +L+
Sbjct: 46  LLENFCQLYDNNPAKSKRLF 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,822
Number of Sequences: 5004
Number of extensions: 29058
Number of successful extensions: 46
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)