Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B18
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 195 2e-51
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 190 9e-50
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 104 6e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 80 1e-16
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.27
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 1.1
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 27 1.5
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 2.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.5
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 4.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 4.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 4.5
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 5.9
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 5.9
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 7.8
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 7.8
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 7.8
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 195 bits (476), Expect = 2e-51
Identities = 89/157 (56%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Frame = +2
Query: 8 VHVGQAGVQSEMPAGSCIALTR-IQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAV 184
+HVGQAG Q L IQP+G M + D F+TFFSETG GK+VPR++
Sbjct: 7 IHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSI 66
Query: 185 FVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLA 364
+VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+IR++A
Sbjct: 67 YVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIA 126
Query: 365 DQCTGLQGFLIFHSYXXXXXXXXXXXXMERLSVDYGK 475
D C+GLQGFL+FHS+ +ERL+++Y K
Sbjct: 127 DNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTK 163
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 190 bits (463), Expect = 9e-50
Identities = 91/162 (56%), Positives = 115/162 (70%), Gaps = 6/162 (3%)
Frame = +2
Query: 8 VHVGQAGVQSEMPAGSCIALTR-IQPDGQMPTD-----KTIGGGDDSFNTFFSETGAGKH 169
VHVGQAGVQ L I PDG PT+ K +D F TFFSETG GK
Sbjct: 7 VHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQGKF 65
Query: 170 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 349
VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+R
Sbjct: 66 VPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLER 125
Query: 350 IRKLADQCTGLQGFLIFHSYXXXXXXXXXXXXMERLSVDYGK 475
IR++AD C+GLQGFL+FHS+ +ERL+++YGK
Sbjct: 126 IRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGK 167
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 104 bits (250), Expect = 6e-24
Identities = 46/115 (40%), Positives = 68/115 (59%)
Frame = +2
Query: 125 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 304
+ N +F+E GK+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+G
Sbjct: 45 ERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKG 104
Query: 305 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSYXXXXXXXXXXXXMERLSVDY 469
HYT G E+ D VLD +R+ A+ C LQGF + HS + ++ +Y
Sbjct: 105 HYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEY 159
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 80.2 bits (189), Expect = 1e-16
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Frame = +2
Query: 8 VHVGQAGVQSEMPAGSCIALTR-IQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAV 184
+ GQ G Q + L I PDG + + T G D + FF ++ +++PRA+
Sbjct: 8 LQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRYIPRAI 65
Query: 185 FVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVLDRIRK 358
+DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++D I +
Sbjct: 66 LIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDR 124
Query: 359 LADQCTGLQGFLIFHSYXXXXXXXXXXXXMERLSVDYGK 475
AD L+GF + HS +ERL+ Y K
Sbjct: 125 EADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPK 163
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.27
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Frame = +3
Query: 96 QLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LS 266
Q+T P+ V + TP T SS L S+ P+ SSSILN +T S++ ++ + ++ L+
Sbjct: 371 QITSPTAVNSSTPITSSSV---LNSSTPITSSSILNTSTPITSSSVLNSSTPITSSSILN 427
Query: 267 LVRRMPQTTMLVVTTPL 317
+ +T+L +TP+
Sbjct: 428 SSTPITSSTVLNSSTPI 444
Score = 28.3 bits (60), Expect = 0.63
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 1269 STPITSSTA---LNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 1325
Query: 303 VTT 311
V T
Sbjct: 1326 VNT 1328
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 501 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 557
Query: 303 VTT 311
V T
Sbjct: 558 VNT 560
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2613 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 2669
Query: 303 VTT 311
V T
Sbjct: 2670 VNT 2672
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2841 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 2897
Query: 303 VTT 311
V T
Sbjct: 2898 VNT 2900
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2937 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 2993
Query: 303 VTT 311
V T
Sbjct: 2994 VNT 2996
Score = 27.1 bits (57), Expect = 1.5
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T SS L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 993 STPITSSSV---LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTV 1049
Query: 303 VTT 311
V T
Sbjct: 1050 VNT 1052
Score = 26.6 bits (56), Expect = 1.9
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 1773 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1829
Query: 303 VTT 311
V T
Sbjct: 1830 VNT 1832
Score = 25.8 bits (54), Expect = 3.4
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 3381 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTV 3437
Query: 303 V--TTPL 317
V +TP+
Sbjct: 3438 VNSSTPI 3444
Score = 25.4 bits (53), Expect = 4.5
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T SS L S+ P+ SSSILN S+ S I ++ +L P T+ V
Sbjct: 405 STPITSSSV---LNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV 461
Query: 303 V--TTPL 317
+ +TP+
Sbjct: 462 LNSSTPI 468
Score = 25.4 bits (53), Expect = 4.5
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 296
+TP T SS L S+ P+ SSS+LN S+ A S I ++ L P T T
Sbjct: 633 STPITSSSV---LNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA 689
Query: 297 LVVTTPL 317
L +TP+
Sbjct: 690 LNTSTPI 696
Score = 25.4 bits (53), Expect = 4.5
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 296
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T
Sbjct: 681 STPITSSTA---LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTA 737
Query: 297 LVVTTPL 317
L +TP+
Sbjct: 738 LNTSTPI 744
Score = 25.4 bits (53), Expect = 4.5
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T SS L S+ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 981 STPITSSSV---LNSSTPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSV 1037
Query: 303 V--TTPL 317
+ +TP+
Sbjct: 1038 LNSSTPI 1044
Score = 25.4 bits (53), Expect = 4.5
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ S I ++ L P T+ V
Sbjct: 1065 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTV 1121
Query: 303 VTT 311
V T
Sbjct: 1122 VNT 1124
Score = 25.4 bits (53), Expect = 4.5
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T SS L S+ P+ SSS+LN S+ S I ++ +L +P T+ V
Sbjct: 1233 STPITSSSI---LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSV 1289
Query: 303 V--TTPL 317
+ +TP+
Sbjct: 1290 LNSSTPI 1296
Score = 25.4 bits (53), Expect = 4.5
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 1605 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTV 1661
Query: 303 V--TTPL 317
V +TP+
Sbjct: 1662 VNSSTPI 1668
Score = 25.4 bits (53), Expect = 4.5
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 299
+TP T S+A L ++ P+ SSS+LN +T S++ +T S I ++ L P T+
Sbjct: 1965 STPITSSTA---LNTSTPITSSSVLNSSTPITSSSVLNT-STPITSSSVLNSSTPITSST 2020
Query: 300 VVTT 311
VV T
Sbjct: 2021 VVNT 2024
Score = 25.4 bits (53), Expect = 4.5
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 299
+TP T S+A L ++ P+ SSS+LN +T S + +T S I ++ L P T+
Sbjct: 2301 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSST 2356
Query: 300 VVTT 311
VV T
Sbjct: 2357 VVNT 2360
Score = 25.4 bits (53), Expect = 4.5
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 299
+TP T S+A L ++ P+ SSS+LN +T S + +T S I ++ L P T+
Sbjct: 2709 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSST 2764
Query: 300 VVTT 311
VV T
Sbjct: 2765 VVNT 2768
Score = 25.0 bits (52), Expect = 5.9
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+ + S+ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 837 STPITSSTV---VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 893
Query: 303 VTT 311
V T
Sbjct: 894 VNT 896
Score = 25.0 bits (52), Expect = 5.9
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+ + S+ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2445 STPITSSTV---VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 2501
Query: 303 VTT 311
V T
Sbjct: 2502 VNT 2504
Score = 24.6 bits (51), Expect = 7.8
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ S I ++ L P T+ V
Sbjct: 729 STPITSSTA---LNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPITSSTV 785
Query: 303 VTT 311
V T
Sbjct: 786 VNT 788
Score = 24.6 bits (51), Expect = 7.8
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 299
+TP T S+A L ++ P+ SSS+LN +T S + +T S I ++ + P T+
Sbjct: 1125 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSTVVNSSTPITSST 1180
Query: 300 VVTT 311
VV T
Sbjct: 1181 VVNT 1184
Score = 24.6 bits (51), Expect = 7.8
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 75 SNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFI 251
S+ +V S ST ++ L S+ P+ SSS+LN +T S + +T S I
Sbjct: 1370 SSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNT-STPI 1428
Query: 252 QNNLSLVRRMPQTTMLVVTT 311
++ + P T+ VV T
Sbjct: 1429 TSSTVVNSSTPITSSTVVNT 1448
Score = 24.6 bits (51), Expect = 7.8
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LSLVRRMPQTTM 296
+TP T SS L S+ P+ SSS+LN +T S + +T + ++ ++ + +T
Sbjct: 1533 STPITSSSV---LNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTA 1589
Query: 297 LVVTTPL 317
L +TP+
Sbjct: 1590 LNTSTPI 1596
Score = 24.6 bits (51), Expect = 7.8
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 296
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T+
Sbjct: 1581 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1637
Query: 297 LVVTTPL 317
L +TP+
Sbjct: 1638 LNSSTPI 1644
Score = 24.6 bits (51), Expect = 7.8
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 296
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T
Sbjct: 1749 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA 1805
Query: 297 LVVTTPL 317
L +TP+
Sbjct: 1806 LNTSTPI 1812
Score = 24.6 bits (51), Expect = 7.8
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 296
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T+
Sbjct: 1845 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1901
Query: 297 LVVTTPL 317
L +TP+
Sbjct: 1902 LNSSTPI 1908
Score = 24.6 bits (51), Expect = 7.8
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 296
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T+
Sbjct: 2037 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 2093
Query: 297 LVVTTPL 317
L +TP+
Sbjct: 2094 LNSSTPI 2100
Score = 24.6 bits (51), Expect = 7.8
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 123 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 302
+TP T S+A L ++ P+ SSS+LN S+ S I ++ + P T+ V
Sbjct: 2157 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTVVNTSTPITSSTV 2213
Query: 303 VTT 311
V T
Sbjct: 2214 VNT 2216
Score = 24.6 bits (51), Expect = 7.8
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 75 SNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFI 251
S+ +V S ST ++ L S+ P+ SSS+LN +T S + +T S I
Sbjct: 2210 SSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNT-STPI 2268
Query: 252 QNNLSLVRRMPQTTMLVVTT 311
++ + P T+ VV T
Sbjct: 2269 TSSTVVNSSTPITSSTVVNT 2288
Score = 24.6 bits (51), Expect = 7.8
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 132 STRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVT 308
ST ++ L S+ P+ SSS+LN +T S + +T S I ++ L P T+ VV
Sbjct: 3225 STAITSSSVLNSSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSSTVVN 3283
Query: 309 T 311
T
Sbjct: 3284 T 3284
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 96 QLTRPSGVETTPSTRSSARPELASTFPVPSSS 191
Q +PSGVE T ++R++A+ + ST + S +
Sbjct: 42 QAVKPSGVEPTNTSRANAQKKTESTGKITSEA 73
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 156 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV 305
E+ F VP +S LNP S +TD +++ N+ + R+ T +++
Sbjct: 218 EVKDLFYVPLTSFLNPKHQKISRFRNTDLLYVEFNIDKIPRIWGITAVIL 267
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 108 PSGVETTPSTRSSARPELASTFPV 179
P+ VETTPST +SA + + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 75 SNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 200
S+L ++PS T+ ST SSA P S+ + SSS+++
Sbjct: 176 SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVS 217
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 352 DAVEDQVYDFLSNGVVT-TSIVVC 284
DA DQ+ +++ NG++T T IV C
Sbjct: 68 DATIDQLQNYMENGILTSTDIVHC 91
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 72 GSNLMVRCQLTRPSGVETTPS-TRSSARPELASTFPVPSSSILN 200
GSN+ + +LTRPS S R +A P + P+P S+IL+
Sbjct: 939 GSNMRLPTKLTRPSNDGRKASGPRPAAPPSIPP--PLPVSNILS 980
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 472 AVVNGESLHEERSDTRTGATTVRVEDEESLE 380
AVVNG S H D + + + ESLE
Sbjct: 662 AVVNGNSQHHHNRDDASSGLSSNGSENESLE 692
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 445 EERSDTRTGATTVRVEDEESLEACA--LVSEFADAVED 338
EER+ T A TV E+EE ++ ++SE + VED
Sbjct: 688 EERAITGQPAITVPAEEEEIIQETVEEVISEEIEPVED 725
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 216 RSALAHTDSCFIQNNLSLVRRMPQT 290
+S + HT++ NN SL+RR+ T
Sbjct: 605 KSLIQHTNNLLQSNNASLLRRLAAT 629
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 272 KEDAANNYARGHYTIGKEIVDLV 340
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 24.6 bits (51), Expect = 7.8
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = -1
Query: 448 HEERSDTRTGATTVRVEDEESLEACALVSEFADAVEDQVYDFLSNGVVTTSIVVCGILLT 269
HE+ + +TG + +++E ++A D E+QV + S G + VV LL
Sbjct: 108 HEKPARPQTGEGSDNEDEDEDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLE 167
Query: 268 SDKLFWMKQLSV 233
+D + + + V
Sbjct: 168 TDPKYGLTESEV 179
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 409 VRVEDEESLEA-CALVSEFADAVEDQVYDFLSN 314
V++ D ES CA++ A+ V DQ++D N
Sbjct: 313 VKLLDSESYTLRCAIIEVLANVVIDQIHDEAQN 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,785
Number of Sequences: 5004
Number of extensions: 46468
Number of successful extensions: 237
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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