Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B17
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 201 5e-53
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 169 2e-43
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 103 2e-23
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 95 4e-21
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 82 3e-17
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 77 1e-15
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 77 1e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 76 2e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 74 9e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 70 1e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 66 2e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 66 3e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 60 2e-10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 55 4e-09
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 55 6e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 54 1e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 54 1e-08
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 50 1e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 45 5e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 45 6e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 43 2e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 42 6e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 40 2e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 35 0.005
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 30 0.14
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 1.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 2.3
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 25 7.2
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 7.2
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 24 9.5
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 24 9.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 24 9.5
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 24 9.5
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 201 bits (490), Expect = 5e-53
Identities = 92/116 (79%), Positives = 109/116 (93%)
Frame = +3
Query: 102 LDTNWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGK 281
++TN+D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQSGTGK
Sbjct: 10 IETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGK 69
Query: 282 TATFSISILQQIATSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 449
TATFSIS+LQ+I TS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGGT
Sbjct: 70 TATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGT 125
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 169 bits (411), Expect = 2e-43
Identities = 82/118 (69%), Positives = 98/118 (83%), Gaps = 1/118 (0%)
Frame = +3
Query: 102 LDTNWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTG 278
L T+ D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ + RDVIAQAQSGTG
Sbjct: 11 LTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTG 70
Query: 279 KTATFSISILQQIATSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 452
KTATFSI ILQ I S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIGGT+
Sbjct: 71 KTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTS 128
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 103 bits (246), Expect = 2e-23
Identities = 51/105 (48%), Positives = 68/105 (64%)
Frame = +3
Query: 135 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISILQQ 314
F+D LK ELL GI+ GFE+PS IQ+ +I + RD++A+A++GTGKTA F I L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 315 IATSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 449
+ T + Q LIL PTRELA Q +V LG H+N K GGT
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGT 150
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 95.1 bits (226), Expect = 4e-21
Identities = 46/102 (45%), Positives = 74/102 (72%), Gaps = 2/102 (1%)
Frame = +3
Query: 126 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQW--RDVIAQAQSGTGKTATFSI 299
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 300 SILQQIATSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 425
++L ++ S+ + QA+ LAP+RELA+QI VV +G + K
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 82.2 bits (194), Expect = 3e-17
Identities = 41/114 (35%), Positives = 68/114 (59%)
Frame = +3
Query: 105 DTNWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKT 284
D+ ++ +TF ++ + +EL GF+ P+ IQQ AI + RDVI AQ+G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 285 ATFSISILQQIATSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 446
A F++ ++Q++ + A++LAPTRELA QI + A+G + + +GG
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGG 151
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 77.0 bits (181), Expect = 1e-15
Identities = 48/107 (44%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 135 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISILQQ 314
F D LK ELLR I GFE PS +QQ I I DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 315 IATSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 452
I E L+L TRELA QI+ +L + + GG N
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGIN 159
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 77.0 bits (181), Expect = 1e-15
Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Frame = +3
Query: 135 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISILQQ 314
F M L + LLR I+ GF+ P+ IQ++ I ++ RDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 315 IATSI--RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 452
+ +++ +ALIL+P RELA Q KVV + + A +GG +
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVS 178
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 76.2 bits (179), Expect = 2e-15
Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 6/95 (6%)
Frame = +3
Query: 129 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISIL 308
+TF D NL L R I+ FEKP+++Q I ++ +D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 309 Q------QIATSIRECQALILAPTRELAQQIQKVV 395
+ QI + R AL+L PTRELAQQ+ V+
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 74.1 bits (174), Expect = 9e-15
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Frame = +3
Query: 132 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISILQ 311
+F MNL +L+G+ GFE P+ IQ + I + +D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 312 QI---ATSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 446
++ + + LIL PTRELA Q V + + CIGG
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGG 367
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 70.1 bits (164), Expect = 1e-13
Identities = 38/106 (35%), Positives = 62/106 (58%)
Frame = +3
Query: 129 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISIL 308
++F D+ + L+ + A +P+ IQ+ I ++ R+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 309 QQIATSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 446
++ + ALIL PTRELA QI + ALG +LN K +GG
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGG 112
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 66.1 bits (154), Expect = 2e-12
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Frame = +3
Query: 126 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISI 305
+E F D+ L E + + I GFE + IQ+R+I P + RDV+ A++G+GKT F I
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 306 LQQI-ATSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 452
++ + A + +I++PTRELA QI V L + + IGG N
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGAN 200
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 65.7 bits (153), Expect = 3e-12
Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Frame = +3
Query: 126 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISI 305
+ +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA F I +
Sbjct: 248 LRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPL 307
Query: 306 LQQIA--TSIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 446
+ I+ + E A++LAPTRELAQQIQ + L +C + +GG
Sbjct: 308 IIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 60.1 bits (139), Expect = 2e-10
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = +3
Query: 126 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISI 305
V + +L E+L + GF KP IQ I D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 306 LQQIATSI--RECQALILAPTRELAQQI 383
L+ ++ + QAL++APTRELA QI
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQI 208
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 55.2 bits (127), Expect = 4e-09
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Frame = +3
Query: 27 PEDSKN-GPSK-DQVYDGPPGMEPGGALDTNWDQVVETFDDMNLKEELLRGIYAYGFEKP 200
PE+ KN P++ D++ G++ G + + V ++ L + + I + G+EKP
Sbjct: 385 PEELKNLSPAEVDELRASLDGIKIRGI---DCPKPVTSWSQCGLSAQTISVINSLGYEKP 441
Query: 201 SAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISILQQIATS--IRECQ---ALILAPTR 365
++IQ +AI RDVI A++G+GKT F + + + I ++ + A+I+ PTR
Sbjct: 442 TSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTR 501
Query: 366 ELAQQIQKVVIALGDHLNAKCHACIGG 446
ELA QI + LN + GG
Sbjct: 502 ELAVQIFRECKPFLKLLNIRACCAYGG 528
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 54.8 bits (126), Expect = 6e-09
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Frame = +3
Query: 111 NWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTAT 290
N + V TF++ +L+ + GFE P+ IQQ+A + RD++ + +G+GKT +
Sbjct: 116 NVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLS 175
Query: 291 FSISIL-----QQIATSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 446
+ + + Q + + L+LAPTRELA QIQ+ G + + C+ G
Sbjct: 176 YCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIR-NTCVYG 231
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 53.6 bits (123), Expect = 1e-08
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Frame = +3
Query: 132 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISILQ 311
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 312 QIA---TSIRECQALILAPTRELAQQIQKV 392
++ T ALI+APTRELA QI V
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 53.6 bits (123), Expect = 1e-08
Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Frame = +3
Query: 120 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSI 299
+ V+ F ++ L + + F + IQ++ I ++ RD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 300 SILQQIA----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 452
+++ + TS+ AL+++PTRELA Q + ++ +G + IGG N
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNN 150
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 50.4 bits (115), Expect = 1e-07
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +3
Query: 135 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISILQQ 314
FD++++ +L G+ Y ++P+ IQ + RDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 315 ---IATSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 446
++ + + L+++PTRELA Q + + +L N K GG
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGG 273
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 45.2 bits (102), Expect = 5e-06
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Frame = +3
Query: 66 YDGPPGMEPGGALDTNWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWR 245
YD P GG ++ V F L LL+ I G+ +P+ +Q+ +I R
Sbjct: 153 YDDIPVEVSGGDIEP-----VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
Query: 246 DVIAQAQSGTGKTATFSISIL--------------QQIATSIRECQA----LILAPTREL 371
D++A AQ+G+GKTA F IL Q R +A LILAPTREL
Sbjct: 208 DLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTREL 267
Query: 372 AQQIQK 389
QI +
Sbjct: 268 VCQIHE 273
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 44.8 bits (101), Expect = 6e-06
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Frame = +3
Query: 156 EELLRGIYAYGFEKPSAIQ----QRAIMPCI-QWRDVIAQAQSGTGKTATFSISILQQIA 320
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 321 TSI-RECQALILAPTRELAQQIQK 389
+ +A+I+APTREL +QI +
Sbjct: 110 LHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.2 bits (97), Expect = 2e-05
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +3
Query: 186 GFEKPSAIQQRAIMPCI-QWRDVIAQAQSGTGKTATFSISILQQIAT-----SIRECQAL 347
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 348 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 452
IL+PTRELA QI + L + IGG +
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNS 151
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 41.5 bits (93), Expect = 6e-05
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Frame = +3
Query: 198 PSAIQQRAIMPCIQW--RDVIAQAQSGTGKTATFSISILQQIA-------TSIRECQALI 350
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 351 LAPTRELAQQIQKVVIALGDH 413
+APTREL QQI V L ++
Sbjct: 222 MAPTRELCQQIYNVANKLNNN 242
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.5 bits (88), Expect = 2e-04
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 153 KEELLRGIYAYGFEKPSAIQQRAIMPCIQWR-DVIAQAQSGTGKTATFSISILQQIA-TS 326
K+ + RG P +Q P + DV A +G+GKT ++ I I+Q ++ +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 327 IRECQALILAPTRELAQQIQK 389
+ + +++ PTREL Q+ K
Sbjct: 203 VPRLRCVVIVPTRELTVQVAK 223
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.1 bits (77), Expect = 0.005
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 150 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTATFSISILQQIATS 326
L +EL+ +Y + EK Q AI VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLED 354
Query: 327 IRECQALILAPTRELAQQIQKVVI 398
+ A + PT+ LAQ +K +I
Sbjct: 355 -NQSTAFFVFPTKSLAQDQKKSLI 377
Score = 24.6 bits (51), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 306 LQQIATSIRECQALILAPTRELAQQIQK 389
LQ I I++CQ L PT++L Q +K
Sbjct: 201 LQGIKEYIKKCQLTELDPTQQLLTQSRK 228
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 30.3 bits (65), Expect = 0.14
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 102 LDTNWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRD 248
LDTNW V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 105 DTNWDQVVETFDDMNLKEELLRGIYAYGF 191
D WD E FDD N + +GI+ F
Sbjct: 283 DIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 2.3
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 270 GTGKTATFSISILQQI----ATSIRECQALILAP-TRELAQQIQ 386
G G T F+ SILQQI SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 156 PSNSYHQRFPPLDPSLYPMHRPAPFQGVHH 67
PS+S Q+ P + SL+ + F G+HH
Sbjct: 372 PSSSQPQQTVPTNNSLFLLKNIPSFGGLHH 401
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 24.6 bits (51), Expect = 7.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 236 NAWHYCTLLDSRRFFKPVSIDSSEQFLLQIHIIKGFHHLI 117
++W+Y LDS+ PV + S+ + I G H I
Sbjct: 509 SSWYYFRFLDSKNSELPVGLASASSLMPVDIYIGGVEHSI 548
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 24.2 bits (50), Expect = 9.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 12 RSEDWPEDSKNGPSKDQVYDGPPGMEPGGALDTNWDQVVE 131
R E +P D + + VY+ PG + T+WDQ+ E
Sbjct: 362 RIETFPADLDSLEEAEIVYETFPGWKVPTTGITHWDQMPE 401
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 24.2 bits (50), Expect = 9.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 249 VIAQAQSGTGKTATFSISILQQIATSIRECQALILAPTRELAQ 377
++AQA+ GK +I +Q + +RE + I R+LA+
Sbjct: 123 MVAQAKEKKGKHKQSTIEHYEQCSRRVRELSSKIWLIERKLAE 165
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 285 LFSQFQTELELLHLAIECMALLH 217
L+ + TE+ L H+ + CM LL+
Sbjct: 62 LWQRVNTEMSLNHINLTCMLLLY 84
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.2 bits (50), Expect = 9.5
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -3
Query: 419 IQMITKSYHHLLDLLRQLSSWSQD 348
I+ I SY H +++ ++L+ W Q+
Sbjct: 285 IEPIQASYDHAVEVYKKLTGWLQE 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,963
Number of Sequences: 5004
Number of extensions: 31061
Number of successful extensions: 141
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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