Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B17
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       64   5e-13
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    26   0.22 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   0.89 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   6.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   6.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 64.5 bits (150), Expect = 5e-13
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 9/123 (7%)
 Frame = +3

Query: 111 NWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQWRDVIAQAQSGTGKTAT 290
           N  Q +E+F+   L+  +L  I   G++KP+ +Q+ A+   +  RD++A AQ+G+GKTA 
Sbjct: 190 NVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAA 249

Query: 291 FSISILQQ---------IATSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 443
           F++ I+           + ++  E Q +I++PTREL  QI + ++    +   K     G
Sbjct: 250 FAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYG 309

Query: 444 GTN 452
           GT+
Sbjct: 310 GTS 312


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 162 IPPSNSYHQRFPPLDPSLYPMH 97
           IPP N+Y  R PPL+P   PMH
Sbjct: 388 IPP-NAYRFR-PPLNPRFGPMH 407


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = -2

Query: 153 SNSYHQRFPP----LDPSLYPMHRPAPFQGVHHKL 61
           S  +++RF P    +D S  P HR  P    HH L
Sbjct: 42  SPDHYERFSPSTHLMDLSSPPEHRDLPIYQSHHHL 76


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 126 PLDPSLYPMHRPAPFQG 76
           PL+P LY  HR   F G
Sbjct: 11  PLNPKLYDKHRAPKFLG 27


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/33 (21%), Positives = 20/33 (60%)
 Frame = -3

Query: 218 TLLDSRRFFKPVSIDSSEQFLLQIHIIKGFHHL 120
           ++L + + + P   + S   ++++H I+G H++
Sbjct: 263 SVLHALQLYYPHVPEYSSSIIMELHNIEGTHYV 295


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/33 (21%), Positives = 20/33 (60%)
 Frame = -3

Query: 218 TLLDSRRFFKPVSIDSSEQFLLQIHIIKGFHHL 120
           ++L + + + P   + S   ++++H I+G H++
Sbjct: 278 SVLHALQLYYPHVPEYSSSIIMELHNIEGTHYV 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,374
Number of Sequences: 438
Number of extensions: 2142
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)