Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B15
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.32
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 0.74
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 26 1.3
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 1.3
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 2.2
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 2.2
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 2.2
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 3.0
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 24 3.9
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 24 5.2
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun... 23 6.9
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 23 6.9
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 23 6.9
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 0.32
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = -3
Query: 160 PEFHKTCAIHYNCHHFHHKTLVNCSFWYHQNVHN*SSTY 44
PE H + + + KT NC WY+++ H Y
Sbjct: 286 PETHSETLLDFKARYLRKKT--NCDKWYNEHEHQRDPAY 322
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 0.74
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 16 RHEFDRSNIDKWMTNYEH 69
+HEF R I KW+ +Y H
Sbjct: 340 KHEFHRPCIAKWIVDYRH 357
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 1.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 70 FDDTKMNNSQVFCDENDDN-YNEWHKSYGTPDLTTPVSQVQ 189
FD T + QV D ND + Y + H Y P+L Q+Q
Sbjct: 261 FDTTHLPEKQVTLDPNDPSFYEQLHDKY-FPNLPVDEKQMQ 300
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 34 SNIDKWMTNYEHFDDTKMNNSQVFCDENDDNYNE 135
SN W N E FD T++ N + DE+DD Y +
Sbjct: 154 SNSRSW-ENEEVFD-TEITNPVIPADEDDDEYQD 185
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.0 bits (52), Expect = 2.2
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Frame = +1
Query: 112 ENDDNYNEW------HKSYGTPDLTTPVSQVQCGGCGALLHLQ*PCNTWLSG 249
E D+ N W +YGT D V + C C AL+ + C + G
Sbjct: 1474 EEDEKLNVWMALLNLEVAYGTEDSLKEVFKEACAYCDALIVYEKLCGILIKG 1525
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.0 bits (52), Expect = 2.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 188 SVVAVEPCYICNDPAIPGYLASEILKNR 271
S+V +E C++C P G +L+N+
Sbjct: 1326 SIVPLEICFLCGTPHFSGRDTCPMLRNK 1353
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.0 bits (52), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 121 HHFHHKTLVNCSFWYHQNVHN*SSTYLY*TYRIH 20
HH HK L + Y+++V N +T + Y +H
Sbjct: 382 HHSEHKFLREILYDYYEHVKNNPNTLISQFYGLH 415
>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 227
Score = 24.6 bits (51), Expect = 3.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 118 DDNYNEWHKSYGTPDLTTPVSQVQCG 195
+D+YN+W S T L + VS + G
Sbjct: 20 EDDYNDWEGSSDTKTLYSSVSDSKIG 45
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 24.2 bits (50), Expect = 3.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 148 YGTPDLTTPVSQVQC 192
Y TP T+PV+Q+ C
Sbjct: 387 YPTPSFTSPVNQILC 401
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 23.8 bits (49), Expect = 5.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +2
Query: 200 VEPCYICNDPAIPGY 244
V CY C+ P PG+
Sbjct: 3 VHTCYFCSGPVYPGH 17
>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 113
Score = 23.4 bits (48), Expect = 6.9
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 RHEFDRSNIDKWMTNYEHFDDTKMNNSQ---VFCDENDDNYNEWHKSYGTPDLTTPVSQV 186
RHE SN++ +++ D + S C +++ + + H G +T V
Sbjct: 45 RHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCV 104
Query: 187 QCG 195
CG
Sbjct: 105 HCG 107
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 23.4 bits (48), Expect = 6.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 112 ENDDNYNEWHKSYGTPDL 165
ENDDN+ + YG P +
Sbjct: 651 ENDDNFQTFQAFYGGPPI 668
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 23.4 bits (48), Expect = 6.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 55 TNYEH-FDDTKMNNSQVFCDENDDNYNEWHKSYGTP 159
+ Y H FD T + F DE+ + N W + TP
Sbjct: 789 SRYMHTFDTTLPMQNDEFTDESVNFENRWKQELKTP 824
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,235,005
Number of Sequences: 5004
Number of extensions: 24034
Number of successful extensions: 86
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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