Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B15
(291 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 28 1.4
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675... 28 1.4
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 2.5
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 27 2.5
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 27 3.3
05_03_0255 + 11100083-11100158,11100244-11100391,11101372-111015... 26 4.4
01_06_0827 + 32260313-32260525,32261862-32262716 26 4.4
02_03_0144 + 15694766-15694883,15694980-15697612 26 5.8
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80... 25 7.7
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 25 7.7
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 64 EHFDDTKMNNSQVFCDENDDNYNEWHKSYG--TPDLTTPVSQVQCGGCGALLHLQ*PC 231
E DD +NS D NDD+ +E + G T D T + + C G LL + PC
Sbjct: 205 ESSDDCSYSNSDSSDDNNDDSTDEDTDTDGNATDDDTDMICAI-CDDGGKLLSCEGPC 261
>03_06_0222 + 32466379-32466741,32466849-32466948,32467443-32467547,
32467627-32467789,32467995-32468115,32468625-32468705,
32468813-32468911,32468955-32468986,32468987-32469137,
32469477-32469563,32470290-32470409,32470514-32470645,
32470743-32470840,32470919-32471042,32471126-32471233,
32471822-32471957,32472751-32472861,32472963-32473026,
32473133-32473205,32473762-32473938,32474012-32474122,
32474189-32474449,32474811-32474981,32475073-32475228,
32475590-32475823,32475936-32476103,32476316-32476425,
32476513-32477041
Length = 1394
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 248 PDSQVLQGH-CKCSRAPQPPHWTWLTG 171
PD Q+L H C CS Q P W ++ G
Sbjct: 1206 PDVQLLSHHVCHCSAIDQSPIWWFMEG 1232
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 31 RSNIDKWMTNYEHFDDTKMNNSQVFCDENDDNY 129
+ IDKW T E ++S D+NDD Y
Sbjct: 156 KDRIDKWKTKQEKRGKLNRDDSDDDDDKNDDEY 188
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 248 PDSQVLQGHCKCSRAPQPPHWTWL 177
P+S ++ +A QP HW WL
Sbjct: 767 PNSSLMNNSSAAPQAVQPNHWPWL 790
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 64 EHFDDTKMNNSQVFCDENDDNYNEWHKSYGTPDL 165
+ + TK N+ +C ++ NY W K + DL
Sbjct: 640 DEYGHTKGGNNNTYCHDHYVNYFRWDKKEESSDL 673
>05_03_0255 +
11100083-11100158,11100244-11100391,11101372-11101559,
11101648-11101819,11102637-11102839,11103640-11103762,
11103838-11103941,11105579-11105713
Length = 382
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 209 CYICNDPAIPGYLASEILKNRTVTELK 289
C +C+DP + +L L++R++ E K
Sbjct: 44 CCVCDDPEVEAFLHGGRLQDRSLREAK 70
>01_06_0827 + 32260313-32260525,32261862-32262716
Length = 355
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 185 SSVVAVEPCYICNDPA 232
SS A PCY+C+ PA
Sbjct: 58 SSTAAPSPCYLCHKPA 73
>02_03_0144 + 15694766-15694883,15694980-15697612
Length = 916
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 175 VSQVQCGGCGALL 213
+S QCGGCGA+L
Sbjct: 26 ISVYQCGGCGAVL 38
>11_01_0107 -
801148-803633,803727-803860,803990-804006,804321-804504,
804819-804883
Length = 961
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -3
Query: 133 HYNCHHFHHKTLVNCSFWYHQNVHN*SSTYLY*TYRIHVS 14
HY+C H NCS W + + S+Y T HVS
Sbjct: 735 HYHCGHGQPHIPYNCSAWEFNSYY--QSSYAGSTVLEHVS 772
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 73 DDTKMNNSQVFCDENDDNYNEWHKSYGTPDLTT 171
D TK ++S V CD++DD+ + +G + T
Sbjct: 148 DGTKPSSSFVDCDDDDDDAGGAYGGFGVKEEVT 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,443
Number of Sequences: 37544
Number of extensions: 154378
Number of successful extensions: 507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -