Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B15
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    33   0.045
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    33   0.045
AL032646-8|CAA21683.1|  198|Caenorhabditis elegans Hypothetical ...    28   0.97 
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    27   2.2  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    27   2.2  
Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z83236-6|CAB05783.1|  132|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z75955-12|CAB00115.2|  485|Caenorhabditis elegans Hypothetical p...    26   3.9  
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    26   3.9  
AF036687-1|AAM75374.1|  173|Caenorhabditis elegans Hypothetical ...    26   3.9  
U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical pr...    25   6.8  
U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical pr...    25   6.8  
AC199169-13|ABO33252.1|  103|Caenorhabditis elegans Hypothetical...    25   9.1  

>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 32.7 bits (71), Expect = 0.045
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 139 HKSYGTPDLTTPVSQVQCGGCGALLHLQ*PC 231
           HKS+  PD     +Q++C  CGA  H+   C
Sbjct: 438 HKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 32.7 bits (71), Expect = 0.045
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 139 HKSYGTPDLTTPVSQVQCGGCGALLHLQ*PC 231
           HKS+  PD     +Q++C  CGA  H+   C
Sbjct: 438 HKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468


>AL032646-8|CAA21683.1|  198|Caenorhabditis elegans Hypothetical
           protein Y54E2A.9 protein.
          Length = 198

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 70  FDDTKMNNSQVFCDENDDNYNEWHKSYG 153
           FDD  + N Q++C + +   N WH+  G
Sbjct: 118 FDDYGVVNFQLYCGQPNGKRNSWHRLTG 145


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 67  HFDDTKMNNSQVFCDENDDNYNEWHKSYGTPDLTTPVSQVQCGGCGALLH 216
           +FD+ K    +V  +E     +   +    P+  TP    +CGGCG   H
Sbjct: 158 NFDEMKTKKKEVQ-EELKLEVDSDSEEDDVPEQKTPKESDRCGGCGKFTH 206


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 67  HFDDTKMNNSQVFCDENDDNYNEWHKSYGTPDLTTPVSQVQCGGCGALLH 216
           +FD+ K    +V  +E     +   +    P+  TP    +CGGCG   H
Sbjct: 171 NFDEMKTKKKEVQ-EELKLEVDSDSEEDDVPEQKTPKESDRCGGCGKFTH 219


>Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2a protein.
          Length = 890

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 151 GTPDLTTPVSQVQCGGCGALLH 216
           GT D   P S  +C GCGA  H
Sbjct: 317 GTVDEEIPASSRKCTGCGANFH 338


>Z83236-6|CAB05783.1|  132|Caenorhabditis elegans Hypothetical
           protein K10H10.7 protein.
          Length = 132

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 239 QVLQGHCKCSRAP-QPPHWTWLTGVV 165
           +V + H    RAP  PPH TW  GVV
Sbjct: 20  EVQEEHVLRLRAPPSPPHVTWAEGVV 45


>Z75955-12|CAB00115.2|  485|Caenorhabditis elegans Hypothetical
           protein R07B7.6 protein.
          Length = 485

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 31  RSNIDKWMTNYEHFDDTKMNNSQVFCDENDD 123
           + NI KWM NY   D+++  N       N D
Sbjct: 79  KRNITKWMDNYFTADESQFLNCSEMIKNNKD 109


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 200 VEPCYICNDPAIPGYLASEILKNRTV 277
           +E CY C+ P  PG+    +  + TV
Sbjct: 3   IEKCYFCSSPIYPGHGIQFVRNDSTV 28


>AF036687-1|AAM75374.1|  173|Caenorhabditis elegans Hypothetical
           protein C08G9.1 protein.
          Length = 173

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 19  HEFDRSNIDKWMTNYEHFDDTKMNNSQVFCDENDDNYNE 135
           H  D  ++ +   +    D+    N+ V CDE  DN+ E
Sbjct: 50  HRSDDRDVPRLRQHCGTIDELPFLNAHVNCDERQDNWQE 88


>U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical
           protein W05H9.4 protein.
          Length = 780

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 46  KWMTNYEHFDDTKMNNSQVFCDENDDNYNEWHKSYGTPDLT 168
           K M  + +F++ ++N       +    Y+ W    GTP L+
Sbjct: 481 KLMMEHLYFEEFELNRLSTQLSQVRTGYSSWPSKEGTPSLS 521


>U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical
           protein F42C5.3 protein.
          Length = 250

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 13  ERHEFDRSNIDKWMTNYEHFDDTKMNNSQVFCDENDDNYNEWHKS 147
           E+  FDR   +    + +  D+ +  N +   D  + N N W+K+
Sbjct: 22  EKETFDRKRRETLEKHKKELDELEKKNKKEEDDLREQNMNLWNKN 66


>AC199169-13|ABO33252.1|  103|Caenorhabditis elegans Hypothetical
           protein F38A1.13 protein.
          Length = 103

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 192 WWLWSPATFAMTLQY 236
           W+ +SP T++M LQY
Sbjct: 61  WFTFSPVTYSMKLQY 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,075,757
Number of Sequences: 27780
Number of extensions: 144258
Number of successful extensions: 528
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)