Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B14
         (263 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   1.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   1.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   1.7  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   1.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   1.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   3.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   3.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   3.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   3.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   5.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    19   9.0  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    19   9.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 104 KWPKHQQMVSIWA 142
           K  KHQQ+  IWA
Sbjct: 26  KLSKHQQIYGIWA 38


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 254 RRSVSVNATYEC 219
           RRS++ NA Y+C
Sbjct: 213 RRSITKNAVYQC 224


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 225 RVRSSVALVIGDDLNFPMLEH 163
           +V+ +   +IG D + PM+ H
Sbjct: 466 QVQRAAKCIIGKDYSLPMVNH 486


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 164 TPTQE*VVPRSIPS 123
           TPT + VV R+IPS
Sbjct: 15  TPTDQRVVTRTIPS 28



 Score = 21.4 bits (43), Expect = 1.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 98   ETKWPKHQQMVSIWAQPT 151
            E K P H+   S W +PT
Sbjct: 1153 EEKKPGHKPSTSSWQKPT 1170


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 178 SHAGTHPHKSRLC 140
           +H+G  P++ RLC
Sbjct: 71  THSGERPYRCRLC 83



 Score = 19.4 bits (38), Expect = 6.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 175 HAGTHPHKSRLCPDRY 128
           H+G  P++ +LC  R+
Sbjct: 100 HSGEKPYECKLCLLRF 115


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 178 SHAGTHPHKSRLC 140
           +H+G  P++ RLC
Sbjct: 327 THSGERPYRCRLC 339



 Score = 19.4 bits (38), Expect = 6.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 175 HAGTHPHKSRLCPDRY 128
           H+G  P++ +LC  R+
Sbjct: 356 HSGEKPYECKLCLLRF 371


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +2

Query: 107 WPKHQQMVSIWAQPTLVWVCS 169
           WP  +Q   +W  P  +++ S
Sbjct: 244 WPIIEQRADLWIIPIAIFLVS 264


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +2

Query: 107 WPKHQQMVSIWAQPTLVWVCS 169
           WP  +Q   +W  P  +++ S
Sbjct: 244 WPIIEQRADLWIIPIAIFLVS 264


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +2

Query: 107 WPKHQQMVSIWAQPTLVWVCS 169
           WP  +Q   +W  P  +++ S
Sbjct: 244 WPIIEQRADLWIIPIAIFLVS 264


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +2

Query: 107 WPKHQQMVSIWAQPTLVWVCS 169
           WP  +Q   +W  P  +++ S
Sbjct: 244 WPIIEQRADLWIIPIAIFLVS 264


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 153 LCGCVPAWES*DHRQ*PGQQNYALVRC 233
           +C C P WE     Q P ++  +   C
Sbjct: 167 MCRCPPDWEGTTLSQSPNRRRASSNPC 193


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 19.0 bits (37), Expect = 9.0
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = -2

Query: 178 SHAGTHPHKSRLC 140
           +H G  P K ++C
Sbjct: 156 THTGERPFKCKIC 168


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 19.0 bits (37), Expect = 9.0
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 136 DRYHLLVLW 110
           + YHL +LW
Sbjct: 250 EMYHLAILW 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,871
Number of Sequences: 336
Number of extensions: 1199
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4271720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)