Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B13
         (492 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    31   0.006
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.092
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   4.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.0  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.006
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 66  CRRQQKPHRLRSELYKNSSVNGQSCPFVFGTTSTHTS 176
           CR+QQK H  +  + K+S +  +S P +  T+ T  S
Sbjct: 124 CRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVS 160



 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 390 TSGCAN*TDACRTYNGEINSCIW 458
           T   ++ T A  TY    NS IW
Sbjct: 197 TGSTSSPTIASATYTNSANSSIW 219


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 27.1 bits (57), Expect = 0.092
 Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 4   RGSNWLPLEKEKVPPTRP-GSC 66
           RG+  LP+++ + PPT+P G+C
Sbjct: 539 RGNELLPMQQSQNPPTKPYGTC 560


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 398 PGGKT*TSEMTAVLTGFLLYSSTLASNTPSLEATFTALITLPSSVPM 258
           P G++  SE  A+L G    S    +  P+L A   A +  P +  M
Sbjct: 99  PSGESMLSERAALLRGVPTLSPVGVALPPTLPAAAAAALLPPQTAAM 145


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 16  WLPLEKEKVPPTRP 57
           W+P  K +VPP+ P
Sbjct: 95  WVPGGKAEVPPSNP 108


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 46  PTRPGSCVEDSR 81
           P RP +C  DSR
Sbjct: 138 PVRPAACTPDSR 149


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 90  CEVSAVFDTRTRSCRW 43
           C V   FD   ++C W
Sbjct: 74  CPVGLAFDIERQTCDW 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,833
Number of Sequences: 336
Number of extensions: 2417
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)