Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B13
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    36   0.003
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   1.2  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   1.5  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    27   1.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   2.7  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    26   3.5  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    25   4.7  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    25   6.2  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   6.2  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    25   8.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.2  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 22/83 (26%), Positives = 40/83 (48%)
 Frame = -2

Query: 482 SVTALMISPDATINFSVVSATCICLIGTPGGKT*TSEMTAVLTGFLLYSSTLASNTPSLE 303
           + T+   +P +++N +  ++     + +    T TS  +  LT     S+T AS+TP   
Sbjct: 334 TATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTS 393

Query: 302 ATFTALITLPSSVPMYITSYLFP 234
           A  T   ++ S+ P Y TS + P
Sbjct: 394 ANSTTSTSVSSTAPSYNTSSVLP 416



 Score = 35.9 bits (79), Expect = 0.003
 Identities = 22/83 (26%), Positives = 40/83 (48%)
 Frame = -2

Query: 482 SVTALMISPDATINFSVVSATCICLIGTPGGKT*TSEMTAVLTGFLLYSSTLASNTPSLE 303
           + T+   +P +++N +  ++     + +    T TS  +  LT     S+T AS+TP   
Sbjct: 448 TATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTS 507

Query: 302 ATFTALITLPSSVPMYITSYLFP 234
           A  T   ++ S+ P Y TS + P
Sbjct: 508 ANSTTSTSVSSTAPSYNTSSVLP 530


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 343 SKNPVKTAVISEVQVLPPGVPIKQMHVALTTEKLIVASGDIIKA 474
           S NPV T  ++   + PP  P++   V  T+   I+ S   I++
Sbjct: 226 SANPVTTPPVNNTLLTPPAPPVELPPVTTTSPNAIIRSVQWIRS 269


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 341 YSSTLASNTPSLEATFTALITLPSSVPMYITSYLFP 234
           Y+ST+ +  P +   +    T P +VP Y TS  FP
Sbjct: 90  YNSTIHNPMPPMSQAYRPPPTEPPTVPAYETSSEFP 125


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 283 IKAVNVASNEGVFDASVEEYSKNPVKTAVISEVQVLPPGVPIKQMHVALTTEK 441
           +KA+N A  + V +   E + +NP  + V+++V   P     K +  ALT  K
Sbjct: 827 VKAINAAEQKEVVNVVTEYFKENPDMSFVVAKV---PISANPKALSFALTYAK 876


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 480  CYSFNDIARCNY*FLRCKCDMHLF 409
            C SFN I  CN    +C  D+ +F
Sbjct: 1855 CCSFNGIGECNLHMQQCASDIGIF 1878


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 280 VIKAVNVASNEGVFDASVEEYSKNPVKTAVISEVQ 384
           V  A NVA+++   D S+E  S N V   +I+E +
Sbjct: 399 VAAASNVAADQSTEDESIESTSTNVVADDLITEAE 433


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 247 DVMYIGTDDGRVIKAV 294
           DV+ IG+ DGRVI+A+
Sbjct: 11  DVLVIGSADGRVIEAI 26


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/76 (19%), Positives = 31/76 (40%)
 Frame = +1

Query: 121 PLMDKAVPSFLARPVLIRVSLQYRFSAIAVHPQVQAMNGNKYDVMYIGTDDGRVIKAVNV 300
           P+ ++++P     P     S +Y+  A+ +      + G  YD       DG  ++ V+ 
Sbjct: 258 PVDEESIPKEERIPRFTAASWKYKSGAVGILAHSIILQGTNYDTCLELQADGHYVRMVDF 317

Query: 301 ASNEGVFDASVEEYSK 348
                ++  S E  S+
Sbjct: 318 YGQPRLYIRSPEADSE 333


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 316 VFDASVEEYSKNPVKTAVISEVQVLPP 396
           V D +V+E     +K AVI  + +LPP
Sbjct: 128 VMDTAVDESELTALKDAVIVSLSLLPP 154


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -2

Query: 290 ALITLPSSVPMYITSYLFPFI 228
           +L+    ++P+++TS+L PF+
Sbjct: 442 SLLWATEAIPLFVTSFLVPFM 462


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 52  RPGSCVEDSRNLTDSEVNFIKTHPLMDKAVPSFLARP 162
           RP   +E   +  ++E  F+KTHPL  +    FL  P
Sbjct: 43  RPARLLE-GLSAVNAETAFVKTHPLQHEWTLWFLKPP 78


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -2

Query: 461 SPDATINFSVVSATCICLIGTPGGKT*TSEMTAVLTGFLLYSSTLASNTPSLEATFTALI 282
           +P  + N+++ S+T +    TP   T  +  T+VL     Y+ST  ++TP      T   
Sbjct: 507 TPVTSSNYTISSSTPVT--STPVTTTNCTTSTSVL-----YTSTPVTSTPLATTNCTTST 559

Query: 281 TLP-SSVPMYITSY 243
           ++P +S P+  ++Y
Sbjct: 560 SVPYTSTPVTSSNY 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,254
Number of Sequences: 5004
Number of extensions: 40521
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)