Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B13
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155 29 1.5
04_04_0783 - 28040828-28041615,28041942-28043589 29 2.7
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949... 28 3.5
02_05_0224 + 26948263-26948520,26948831-26948907,26949597-269496... 28 4.7
07_03_1072 - 23755657-23755662,23755964-23756137,23757144-237573... 27 6.2
06_03_1109 - 27672176-27672223,27672371-27672452,27674169-27674395 27 6.2
12_02_0674 - 21745321-21746223,21746229-21747608 27 8.2
10_08_0609 - 19196705-19196845,19196927-19196984,19197072-191971... 27 8.2
07_03_0184 - 14825142-14825551,14826163-14826280 27 8.2
05_06_0269 - 26818182-26820266 27 8.2
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 27 8.2
>11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155
Length = 871
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 48 DKTGFLCRRQQKPHRLRSELYKNSSVNGQSCPFV 149
D TG +C +++P R+ + L +SS++G+ PF+
Sbjct: 64 DWTGVVCSGRRQPERVVALLMNSSSLSGRISPFL 97
>04_04_0783 - 28040828-28041615,28041942-28043589
Length = 811
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -1
Query: 423 DMHLFNWHTRR*NLNFGDDGSFNRIFTVLFNTSIKYTFVRSHVH-GFNNSAVVCTDVHNV 247
+M+LFNWH NL + + G +++ ++ Y V H N +V + NV
Sbjct: 347 EMNLFNWHLA--NLEYANAGLLSKLSLAFWDQDDPYDMVGDHCFLPGGNGRLVQSLAENV 404
Query: 246 VFVSIHRLH-LRVNSD 202
V +H +R D
Sbjct: 405 PIVYERTVHTIRYGGD 420
>02_05_1152 +
34494423-34494586,34494725-34494781,34494851-34494908,
34494989-34495088,34495270-34495383,34495588-34495810,
34496112-34496246,34496575-34496679,34496906-34497001,
34497387-34497516,34497933-34497983,34498538-34498648,
34499267-34499376,34499490-34499655,34499740-34499820,
34499907-34499975,34500099-34500212,34500699-34500760,
34500894-34500990,34501152-34501271
Length = 720
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 249 VVFVSIHRLHLRVNSDSRKSILQTNSYEYWSCQKRRD 139
++FVS+ RL+++ N+D R L+ S E + +R +
Sbjct: 77 LIFVSLSRLNVKANNDQRIMNLELMSQETYLADERHE 113
>02_05_0224 +
26948263-26948520,26948831-26948907,26949597-26949658,
26949797-26949915,26950326-26950493,26950587-26950619
Length = 238
Score = 27.9 bits (59), Expect = 4.7
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +1
Query: 118 HPLMDKAVPSFLARPVLIRVSL----QYRFSAIAVHP-QVQAMNGNKYDVMYIGTDDGRV 282
HP A S L RPV +L SA +VH V+ +G D + T G+V
Sbjct: 46 HPPRVSAAVSPLVRPVAAGFALFSMATAASSAASVHDFTVKDASGKDVD---LSTFKGKV 102
Query: 283 IKAVNVASNEGVFDASVEEYSK 348
+ VNVAS G+ +++ E S+
Sbjct: 103 LLIVNVASQCGLTNSNYTELSQ 124
>07_03_1072 -
23755657-23755662,23755964-23756137,23757144-23757380,
23758109-23758215,23758304-23758841
Length = 353
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 135 SCPFVFGTTSTHTS*FAV*IFCYRCSPASASDEW 236
+CP FG + HT F + + +R S+ DEW
Sbjct: 218 NCPSHFGELTPHTLFFGILLPIFRNLNISSDDEW 251
>06_03_1109 - 27672176-27672223,27672371-27672452,27674169-27674395
Length = 118
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 154 ARPVLIRVSLQYRFSAIAVHPQVQAMNGNKY-DVMYIGTDDGRVIKAVNVASNEG 315
ARP+L+ + L + S ++ A GN Y ++ D+GR ++A VA G
Sbjct: 5 ARPLLLCLCLCFASSCLSSAVDAAAAAGNGYRTTAFLVDDEGRRLRAELVAGGGG 59
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = -2
Query: 452 ATINFSVVSATCICLIGTPGGKT*TSEMTAVLTGFLLYSSTLASNTPSLEATFTALITLP 273
+T + S TC + T GKT ++ T+ L+ S++ S+TPS ++ I +P
Sbjct: 566 STATGKIPSTTCTSPLSTATGKTSSTPSTSPLS----TSTSKTSSTPSTSPLSSSTIKIP 621
Query: 272 SS 267
++
Sbjct: 622 TT 623
>10_08_0609 -
19196705-19196845,19196927-19196984,19197072-19197142,
19197352-19197428,19197500-19197582,19197659-19197718,
19198007-19198142,19198247-19198317,19198560-19198651,
19198785-19198882,19199012-19199164,19199254-19199419,
19200112-19200510,19200592-19200673,19200739-19200962
Length = 636
Score = 27.1 bits (57), Expect = 8.2
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 365 AVLTGFLLYSSTLASNTPSLEATFTALI-TLPSSVPMYITSYLFPFIACTCG*TA 204
A LTG L + + P++ A FTAL+ TL + +P+ I + F IA G TA
Sbjct: 278 AALTGGTLMAISGGLAAPAIAAGFTALVPTLHTLIPL-IGASGFAAIATAAGHTA 331
>07_03_0184 - 14825142-14825551,14826163-14826280
Length = 175
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +1
Query: 46 PTRPGSCVEDSRNLTDSEVNFIKTHPLMDKAVPSFLARPVLIRVSLQYRFSAIAVH 213
P +P S +++ + +T VNF+ K P L RP L ++H
Sbjct: 22 PEQPESSIKNVKAITTRGVNFVVLDMDTGKETPLILGRPFLSTAGASIDVGTESIH 77
>05_06_0269 - 26818182-26820266
Length = 694
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -1
Query: 405 WHTRR*NLNFGDDGSFNRIFTVLFNTSIKYTFVRSHVHGFNNSAVVCT 262
W + N NR+ V S F +SH G+NNS V T
Sbjct: 299 WAKDKRNALISTYSHLNRLLAVCLTISAVALFHQSHKQGYNNSDVKVT 346
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 285 NNSAVVCTDVHNVVFVSIHRLHLRVNSDSRKSILQTNSYEYWSC 154
N VVC + V+V H + S SR ++ TNSYE++ C
Sbjct: 610 NGKYVVCASEDSHVYVWRHD-NTSHPSRSRSAVDVTNSYEHFHC 652
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,862,040
Number of Sequences: 37544
Number of extensions: 243813
Number of successful extensions: 721
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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