Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B13
(492 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein. 95 2e-20
AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical ... 95 2e-20
AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a... 39 0.002
AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal... 39 0.002
AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin re... 29 1.4
AF101312-2|AAC69222.2| 475|Caenorhabditis elegans Hypothetical ... 29 2.4
Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical pr... 28 3.2
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 28 3.2
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr... 27 7.4
U41746-1|AAA83330.3| 347|Caenorhabditis elegans Seven tm recept... 27 7.4
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 27 9.8
U97401-1|AAB52466.2| 336|Caenorhabditis elegans Hypothetical pr... 27 9.8
U39849-2|AAN63462.2| 370|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer... 27 9.8
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ... 27 9.8
>U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein.
Length = 562
Score = 95.5 bits (227), Expect = 2e-20
Identities = 54/161 (33%), Positives = 88/161 (54%)
Frame = +1
Query: 10 SNWLPLEKEKVPPTRPGSCVEDSRNLTDSEVNFIKTHPLMDKAVPSFLARPVLIRVSLQY 189
S W+ + +VP RPGSC DS L ++ V+FI HPL+ + +PS +A P+L+ + +
Sbjct: 360 SMWMAFNRNEVPKPRPGSCSPDSTKLPENTVSFILHHPLLHRPIPS-VAAPLLVEGADRA 418
Query: 190 RFSAIAVHPQVQAMNGNKYDVMYIGTDDGRVIKAVNVASNEGVFDASVEEYSKNPVKTAV 369
+ I V P+V+A+ G+ YD+++IGT DG+V+K V V N V
Sbjct: 419 DLTQITVLPRVRAVGGHNYDILFIGTSDGKVLKVVEVDGN-----------------ATV 461
Query: 370 ISEVQVLPPGVPIKQMHVALTTEKLIVASGDIIKAVTLSHC 492
I V GVPI +++ T E +++ S D I ++ + +C
Sbjct: 462 IQSATVFQRGVPI--VNLLTTKESVVIVSADEIASLPVHNC 500
>AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical
protein Y54E5B.1a protein.
Length = 712
Score = 95.5 bits (227), Expect = 2e-20
Identities = 54/161 (33%), Positives = 88/161 (54%)
Frame = +1
Query: 10 SNWLPLEKEKVPPTRPGSCVEDSRNLTDSEVNFIKTHPLMDKAVPSFLARPVLIRVSLQY 189
S W+ + +VP RPGSC DS L ++ V+FI HPL+ + +PS +A P+L+ + +
Sbjct: 357 SMWMAFNRNEVPKPRPGSCSPDSTKLPENTVSFILHHPLLHRPIPS-VAAPLLVEGADRA 415
Query: 190 RFSAIAVHPQVQAMNGNKYDVMYIGTDDGRVIKAVNVASNEGVFDASVEEYSKNPVKTAV 369
+ I V P+V+A+ G+ YD+++IGT DG+V+K V V N V
Sbjct: 416 DLTQITVLPRVRAVGGHNYDILFIGTSDGKVLKVVEVDGN-----------------ATV 458
Query: 370 ISEVQVLPPGVPIKQMHVALTTEKLIVASGDIIKAVTLSHC 492
I V GVPI +++ T E +++ S D I ++ + +C
Sbjct: 459 IQSATVFQRGVPI--VNLLTTKESVVIVSADEIASLPVHNC 497
>AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a
protein.
Length = 658
Score = 38.7 bits (86), Expect = 0.002
Identities = 12/36 (33%), Positives = 28/36 (77%)
Frame = +1
Query: 34 EKVPPTRPGSCVEDSRNLTDSEVNFIKTHPLMDKAV 141
+++P RPG+C ++S +++D++++F KTH L+ ++
Sbjct: 350 DEIPAHRPGTCSQNSHSISDTDLHFAKTHLLVSDSI 385
>AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal
protein 20, isoform a protein.
Length = 658
Score = 38.7 bits (86), Expect = 0.002
Identities = 12/36 (33%), Positives = 28/36 (77%)
Frame = +1
Query: 34 EKVPPTRPGSCVEDSRNLTDSEVNFIKTHPLMDKAV 141
+++P RPG+C ++S +++D++++F KTH L+ ++
Sbjct: 350 DEIPAHRPGTCSQNSHSISDTDLHFAKTHLLVSDSI 385
>AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin
related protein 2 protein.
Length = 654
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +1
Query: 55 PGSCVEDSRNLTDSEVNFIKTHPLMDKAVPSFLARPVLIRVSLQYRFSAIAVHPQVQAMN 234
P +C SR E++ I+ PL+ + + A P+ I RF + + ++
Sbjct: 339 PDTC---SRANDIEELSRIRLKPLIKQKIS---ANPIYIFHGKD-RFVHVLAQEDTRDLS 391
Query: 235 GNKYDVMYIGTDDGRVIKAV 294
YD++Y+ T+ G ++K V
Sbjct: 392 NRAYDILYVATNLGNILKIV 411
>AF101312-2|AAC69222.2| 475|Caenorhabditis elegans Hypothetical
protein F56E10.3 protein.
Length = 475
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 344 LYSSTLASNTPSLEATFTALITLPSSVPMYITSYLFP 234
LYS+T + SL + T P S+P ++ SY FP
Sbjct: 184 LYSTTTTYTSISLFSLSLFPFTFPFSIPYFLFSYKFP 220
>Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical
protein K01C8.2 protein.
Length = 389
Score = 28.3 bits (60), Expect = 3.2
Identities = 26/89 (29%), Positives = 37/89 (41%)
Frame = -2
Query: 449 TINFSVVSATCICLIGTPGGKT*TSEMTAVLTGFLLYSSTLASNTPSLEATFTALITLPS 270
T SV+ AT +C G+ T G +Y +A T + E T +A+ + PS
Sbjct: 212 TCQLSVLLATYVCC-----GQGSTGSTIGCADGRPVYQQ-IAGQTYTCEIT-SAITSCPS 264
Query: 269 SVPMYITSYLFPFIACTCG*TAIAENLYC 183
+ F + C G T I ENL C
Sbjct: 265 GYDCAPSDDPFVDVCCLTGSTPIPENLSC 293
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 301 ASNEGVFDASVEEYSKNPVKTAVISEVQVLPPGVPIKQMHVALTT 435
A + S++ ++ P+ A+IS PP V H LTT
Sbjct: 835 APTNSIIGGSLDSFTNPPIIAALISSSAASPPAVQSDIPHAVLTT 879
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 7 GSNWLPLEKEKVPPTRPGSCVEDS 78
G N +PL K + P +P +CVE S
Sbjct: 1047 GYNCVPLAKPNMVPAQPKTCVESS 1070
>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical protein
B0024.6 protein.
Length = 1161
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 46 PTRPGSCVEDSRNLTDSEVNFIKTHPLMDKAVPSFLARPVLIRV 177
P R G+ E +RN+ +NF+K+ L D ++P + IRV
Sbjct: 1009 PRRNGN--EHTRNIASMSINFVKS--LADFSIPHLPGEKIKIRV 1048
>U41746-1|AAA83330.3| 347|Caenorhabditis elegans Seven tm receptor
protein 177 protein.
Length = 347
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 351 IFTVLFNTSIKYTFVRSHVHGFNNSAVVCTDVHNVVF 241
I+ +LF+ S T +H F +V DVHN +F
Sbjct: 52 IYEILFSCSAIVT--EPLLHSFTTRVIVIVDVHNSIF 86
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 219 LRVNSDSRKSILQTNSYE-YWSCQKRRDSFVH*RMSFYKVHFGVCEVSAV 73
+ + D K + YE + SCQK+ S V ++S + V E SAV
Sbjct: 163 MAASKDHSKPLFDVIRYEDHESCQKKTSSVVKAKLSLHSSDAPVAEKSAV 212
>U97401-1|AAB52466.2| 336|Caenorhabditis elegans Hypothetical
protein F21A9.2 protein.
Length = 336
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 344 LYSSTLASNTPSLEATFTALITLPSSVPMYITSYLFPFIACTCG*TAIAENLY 186
L SS A + PSL A+ + SS P+Y PF +CTCG + ++ Y
Sbjct: 189 LSSSPHAPSVPSLSASCSPTSKSSSSEPIYPER---PF-SCTCGVSFSSQTTY 237
>U39849-2|AAN63462.2| 370|Caenorhabditis elegans Hypothetical
protein C06A8.8a protein.
Length = 370
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 345 TVLFNTSIKYTFVRSHVHGFNNSAV 271
TV FN+ K FVR VHGF++S V
Sbjct: 117 TVFFNSPAK--FVRISVHGFSDSDV 139
>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform b protein.
Length = 1051
Score = 26.6 bits (56), Expect = 9.8
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 247 DVMYIGTDDGRVIKA-VNVASNEGVFDASVEEYSKNPVKTAVISEVQVLPPGVPIKQMHV 423
D Y D RV KA + E DA EE K+ + + L GVP +
Sbjct: 359 DPAYFSDWDSRVKKASAAMQDRESAVDALYEEIEKDLILIGATAIEDKLQDGVPEAIARL 418
Query: 424 ALTTEKLIVASGD 462
+ K+ V +GD
Sbjct: 419 SEANIKIWVLTGD 431
>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform a protein.
Length = 1222
Score = 26.6 bits (56), Expect = 9.8
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 247 DVMYIGTDDGRVIKA-VNVASNEGVFDASVEEYSKNPVKTAVISEVQVLPPGVPIKQMHV 423
D Y D RV KA + E DA EE K+ + + L GVP +
Sbjct: 530 DPAYFSDWDSRVKKASAAMQDRESAVDALYEEIEKDLILIGATAIEDKLQDGVPEAIARL 589
Query: 424 ALTTEKLIVASGD 462
+ K+ V +GD
Sbjct: 590 SEANIKIWVLTGD 602
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,463,055
Number of Sequences: 27780
Number of extensions: 234429
Number of successful extensions: 799
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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