Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B12
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...   115   3e-27
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   2.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   6.1  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.1  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score =  115 bits (277), Expect = 3e-27
 Identities = 57/102 (55%), Positives = 73/102 (71%)
 Frame = +2

Query: 59  KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLNKYLW 238
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T +VRVD  LNK +W
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65

Query: 239 SKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 364
            +G+RNVP           +D++D A  L+T V  V VA+ K
Sbjct: 66  KRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK 105


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 85   SNDFIYGRFAFPLSFGFCH 29
            S+DF  GRF F +   FCH
Sbjct: 1271 SSDFSIGRFKFLIKLLFCH 1289


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 68  INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 166
           INE VT +Y  N+   + G+G  ++A   +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 184 TNGYSRRKSRYPPKQISLVKRSQE 255
           T G +  +SR PP+QIS+    +E
Sbjct: 83  TKGRAHPRSRRPPRQISIDSAKKE 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,494
Number of Sequences: 5004
Number of extensions: 36407
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)