Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B12
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...   156   7e-39
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    85   2e-17
U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone...    28   2.3  
AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear recep...    28   2.3  
AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family ...    28   2.3  
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AL023828-5|CAA19450.1|  260|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z92822-9|CAL49448.1|  576|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z82094-5|CAL49446.1|  576|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    26   9.4  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      26   9.4  
AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     26   9.4  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     26   9.4  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    26   9.4  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    26   9.4  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score =  156 bits (378), Expect = 7e-39
 Identities = 69/120 (57%), Positives = 90/120 (75%)
 Frame = +2

Query: 38  PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDT 217
           PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI EI++FA+ QM T DVRVDT
Sbjct: 3   PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDT 62

Query: 218 RLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 397
           +LNK++WSKG++NVP+          N+DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 63  KLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 37/70 (52%), Positives = 48/70 (68%)
 Frame = +2

Query: 188 MGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKG 367
           M T DVRVDT+LNK++WSKG++NVP+          N+DEDSA KL+TL TYVP  +  G
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHG 60

Query: 368 LQTENVDASQ 397
           L   NVD+ +
Sbjct: 61  LTNVNVDSEE 70


>U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 10 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 190 GYSRRKSRYPPKQISLVKRSQECS 261
           GY++R  RYPP  I  V+ S ECS
Sbjct: 96  GYTKRTRRYPP--IKKVEASDECS 117


>AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-10 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 190 GYSRRKSRYPPKQISLVKRSQECS 261
           GY++R  RYPP  I  V+ S ECS
Sbjct: 96  GYTKRTRRYPP--IKKVEASDECS 117


>AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family of
           potassium channelsprotein 45, isoform a protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 275 HEHGMEHS*LL--LTKDICLGGYLLLRLEYP 189
           H+ G+ H  L+  L   ICLGG+L  +LE P
Sbjct: 45  HKFGIRHITLISILAAYICLGGFLFQKLESP 75


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +2

Query: 38  PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRA---IKEIRRF-AEKQMGTPDV 205
           PK E +  + I E + R Y++   +RL  +     APRA    +  RRF A K+M   + 
Sbjct: 71  PKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKEA 130

Query: 206 RVDTRLNKYLWSKGVRNVP 262
            ++ + N+ L ++G+   P
Sbjct: 131 SIEEQRNR-LMAEGIAVPP 148


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 412 NLFLFLAGVNIL-CLQTLDGGNGHICYKG 329
           +L  FL  VN L CL  +DG +G   Y+G
Sbjct: 20  HLMPFLTSVNTLSCLSIIDGTSGDCLYRG 48


>AL023828-5|CAA19450.1|  260|Caenorhabditis elegans Hypothetical
           protein Y17G7B.3 protein.
          Length = 260

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 394 AGVNILCLQTLDGGNGHICY 335
           AG+ I CL T    +GHICY
Sbjct: 100 AGLQIKCLSTPCHTSGHICY 119


>Z92822-9|CAL49448.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK520.3b protein.
          Length = 576

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 237 QRYLFRRVSTLTSGVPICFSANLRISLIARGARFLKP 127
           QR+    V  LTS V IC  ANL+ S     A+ + P
Sbjct: 418 QRFPTHVVPILTSSVVICTQANLKKSAHKFAAQLMTP 454


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical protein
            ZK520.3a protein.
          Length = 1383

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 237  QRYLFRRVSTLTSGVPICFSANLRISLIARGARFLKP 127
            QR+    V  LTS V IC  ANL+ S     A+ + P
Sbjct: 1225 QRFPTHVVPILTSSVVICTQANLKKSAHKFAAQLMTP 1261


>Z82094-5|CAL49446.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK520.3b protein.
          Length = 576

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 237 QRYLFRRVSTLTSGVPICFSANLRISLIARGARFLKP 127
           QR+    V  LTS V IC  ANL+ S     A+ + P
Sbjct: 418 QRFPTHVVPILTSSVVICTQANLKKSAHKFAAQLMTP 454


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical protein
            ZK520.3a protein.
          Length = 1383

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 237  QRYLFRRVSTLTSGVPICFSANLRISLIARGARFLKP 127
            QR+    V  LTS V IC  ANL+ S     A+ + P
Sbjct: 1225 QRFPTHVVPILTSSVVICTQANLKKSAHKFAAQLMTP 1261


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 237  QRYLFRRVSTLTSGVPICFSANLRISLIARGARFLKP 127
            QR+    V  LTS V IC  ANL+ S     A+ + P
Sbjct: 1225 QRFPTHVVPILTSSVVICTQANLKKSAHKFAAQLMTP 1261


>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 325 VYPCNICARCLHQGFADR 378
           VY CN+C   +H+G  DR
Sbjct: 119 VYACNVCGIRVHKGCLDR 136


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 325 VYPCNICARCLHQGFADR 378
           VY CN+C   +H+G  DR
Sbjct: 123 VYACNVCGIRVHKGCLDR 140


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 325 VYPCNICARCLHQGFADR 378
           VY CN+C   +H+G  DR
Sbjct: 119 VYACNVCGIRVHKGCLDR 136


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 325 VYPCNICARCLHQGFADR 378
           VY CN+C   +H+G  DR
Sbjct: 123 VYACNVCGIRVHKGCLDR 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,127,200
Number of Sequences: 27780
Number of extensions: 206656
Number of successful extensions: 515
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)