Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B11
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 149 2e-37
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 147 7e-37
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 0.23
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 29 0.39
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.52
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.6
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 2.1
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 3.7
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 3.7
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 4.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 6.4
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 25 6.4
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 6.4
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 25 6.4
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 8.5
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 8.5
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 8.5
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 24 8.5
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 24 8.5
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 8.5
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 24 8.5
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 149 bits (360), Expect = 2e-37
Identities = 73/114 (64%), Positives = 83/114 (72%)
Frame = +3
Query: 36 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 215
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 377
+ VRGIS KLQEEERER+D YVPEVS LE+D I VD DTKDMLK L + +I
Sbjct: 61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 147 bits (356), Expect = 7e-37
Identities = 75/125 (60%), Positives = 87/125 (69%)
Frame = +3
Query: 36 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 215
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLP 395
+ VRGIS KLQEEERER+D YVPEVS LE D + VD DTKDMLK L + I +++
Sbjct: 61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVL 119
Query: 396 QPATQ 410
PA Q
Sbjct: 120 APAPQ 124
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 29.5 bits (63), Expect = 0.23
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 251 LNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 117
+NR +L + + ++ G FV + LS+ND NF+ P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 28.7 bits (61), Expect = 0.39
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Frame = +3
Query: 258 EEERERRDNYV------PEVSALEQDIIE------VDSDTKDMLKMLDFSNINGLQL 392
EEE+ER NY+ P +S +E +++ +++ + M+D SN GLQL
Sbjct: 265 EEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQL 321
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.52
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -1
Query: 236 SHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 87
SH+ + +T+ + G P V KR+ D N L + IE +KS P VV +
Sbjct: 37 SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 225 SQVRGISIKLQEEERERRDNYVPEV 299
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 210 RRLIHSQVRGISIKLQEEERERRDNYVPEVS 302
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 3.7
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 383 TINVTEVKH-LQHILGVRIDFNDILF*SRYFWDIIVTPFTLLFLKLNRDSSHLGVYETSH 207
T +V+H L+ +L + I+ + +YF I TP +L + +DS+ L YE+S
Sbjct: 461 TYKYIKVRHRLKALLVLSIENTENPEKRKYFEINIETPVRILSCRCVKDSTLLPPYESSS 520
Query: 206 Q 204
Q
Sbjct: 521 Q 521
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 215 TSHQMGGEPSNFVAKRLSRNDSN 147
TS MGG PS F LSRN N
Sbjct: 455 TSSIMGGNPSLFNGSVLSRNSVN 477
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 4.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 315 PVLEQILLGHNCHAF 271
P+LEQ+L G+NC F
Sbjct: 142 PMLEQVLNGYNCTIF 156
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 6.4
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 249 KLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 380
K E+++E DNY ALE ++ +++ ++LK DF++ N
Sbjct: 845 KFIEKDQESIDNYEQNREALESEVATAEAEL-ELLKE-DFASEN 886
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 281 VTPFTLLFLKLNRDSSHLGVYETSHQMGGEP 189
VTP TL FLK N + S L + + + EP
Sbjct: 35 VTPKTLEFLKQNINPSMLACVDEATMIDAEP 65
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 6.4
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 171 LRNKIAGF----TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD 338
+R +IA F H ++R S+ ++ + E +R Y+P +S Q+ +EV ++
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEVVNE 431
Query: 339 TKDMLKMLDFSNI 377
K L S++
Sbjct: 432 RYKRKKGLKDSDV 444
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 6.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 100 LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 189
+GLL TS I R L ++LFAT LL
Sbjct: 94 VGLLYTSASIYQMTRGSLIIFVALFATTLL 123
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.2 bits (50), Expect = 8.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 180 KIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYV 290
KIA FT ++ I G+S+KLQE+E +R + V
Sbjct: 352 KIASFTDIMVCLCIG----GLSLKLQEQELRKRPDIV 384
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.2 bits (50), Expect = 8.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 139 VRKLLSFLLSLFATKLLGSPPI**DVSYTPRCEESLLSFKK 261
VR LL FL+ + ++G+P VSY P + + F+K
Sbjct: 161 VRPLLRFLIEFWLNGVVGTPED--FVSYLPSTDSNDKKFRK 199
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 8.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 144 EIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR 236
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.2 bits (50), Expect = 8.5
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 380
L+H Q+R + KL E+R+ + +E + + + + L+FSN N
Sbjct: 885 LLHDQIRITNAKL-----EKREKLINASKYIEDTLRSEIQEAAEKVSNLEFSNFN 934
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 195 TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKD 347
+ HLM ++ + + QEE R+RR ++ E E++ +D D +
Sbjct: 99 SAHLMTKIFSLSGKLNMVLSQEEMRQRRLDFSSEDGEEEEENDYIDEDVDE 149
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = -1
Query: 89 FDYNLRRFFYGLSPNTTH--DCGDVSCLNP 6
FD N RF+ G NT H D +S NP
Sbjct: 97 FDKNGSRFYTGSLDNTIHCWDLNGLSATNP 126
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 8.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 243 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTK 344
SI Q ++ D V + S EQD EVD+D K
Sbjct: 18 SIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYK 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,130
Number of Sequences: 5004
Number of extensions: 32815
Number of successful extensions: 129
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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