Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B11
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 139 7e-34
03_01_0066 - 537729-538163 136 5e-33
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 35 0.031
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 30 0.88
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 30 0.88
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333... 29 2.0
12_02_0534 - 20103908-20105897,20106314-20107116 27 6.2
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 27 6.2
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 27 8.2
08_01_0057 - 383603-384256 27 8.2
07_01_0358 - 2631214-2632992 27 8.2
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445... 27 8.2
03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411 27 8.2
>10_07_0174 + 13815478-13815903
Length = 141
Score = 139 bits (337), Expect = 7e-34
Identities = 67/128 (52%), Positives = 89/128 (69%)
Frame = +3
Query: 36 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 215
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTHLMRR
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60
Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLP 395
+ VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML L +++ G++
Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120
Query: 396 QPATQGGY 419
Q + Y
Sbjct: 121 QEVSAPTY 128
>03_01_0066 - 537729-538163
Length = 144
Score = 136 bits (330), Expect = 5e-33
Identities = 65/117 (55%), Positives = 85/117 (72%)
Frame = +3
Query: 36 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 215
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60
Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGL 386
+ VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML L +++ G+
Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV 117
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 34.7 bits (76), Expect = 0.031
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 400 GCGSCRPLMLLKSSIFNISLVSESTSMISCSRADT 296
GCG+ +K+ +F+I LVSE S+I+C A T
Sbjct: 148 GCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 29.9 bits (64), Expect = 0.88
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 198 THLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 377
T LM ++I SQ SI ++E N+V A + +I S T+D+ +D++N
Sbjct: 311 TSLMEQIISSQP---SISEVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYANT 367
Query: 378 NGLQ 389
N ++
Sbjct: 368 NQVE 371
>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
Length = 138
Score = 29.9 bits (64), Expect = 0.88
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 421 P*PPCVAGCGSCRP 380
P PPC GC SCRP
Sbjct: 98 PPPPCCPGCNSCRP 111
>05_04_0273 +
19632430-19632762,19633109-19633177,19633318-19633374,
19633534-19633597,19633887-19634102,19634761-19634803,
19635267-19635345,19635467-19635559
Length = 317
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -1
Query: 254 KLNRDSSHLGVYET----SHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 87
+LNRD + L V++ S Q +P+N K SNF + +G+ +P V
Sbjct: 127 RLNRDVAKLEVFKKTLMQSLQEDEDPANTTPKARVSETSNFSSATSVGVPRPPRPHVFLP 186
Query: 86 DYN 78
YN
Sbjct: 187 SYN 189
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 228 QVRGISIKLQEEER---ERRDNYVPEVSALEQDIIEVDSDTKDMLK 356
Q+ G+ + ++ + ERRD Y+ + +A +++VDS + M +
Sbjct: 111 QIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDSRLEAMYR 156
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 27.1 bits (57), Expect = 6.2
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Frame = +3
Query: 156 IPTKPLRNKIAG---FTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIE 326
+ TK L+ + ++ + + +H ++ G KL +E++ + +V LEQD++
Sbjct: 752 LSTKELQKMVQALPQYSDQIDKLALHVEIAG---KLNSTIKEQQ---LKDVGQLEQDLVF 805
Query: 327 VDSDTKDMLKM----LDFSNINGLQL 392
D+ TK+++ LD S N L+L
Sbjct: 806 GDAGTKELINFFRTHLDISRENKLRL 831
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 26.6 bits (56), Expect = 8.2
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +3
Query: 108 TLDFDTNKRICEEIAIIP---TKPLRN--KIAGFTTHLMRR-LIHSQVRGISIKLQEEER 269
++ D KR+ +EI + +K + N K A ++ R IH QV+ I + + E +R
Sbjct: 196 SISLDEEKRLVKEIKQLNGTRSKVIENAAKRAKMQDTVVERGTIHDQVKQIGVGIDEVKR 255
Query: 270 ERRDNYVPEVSALEQDIIEVDSD 338
+R+ ++ LE I VD +
Sbjct: 256 DRQ-AVRDKIKVLEDQIHAVDGE 277
>08_01_0057 - 383603-384256
Length = 217
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 284 LCPRSICSRTGYH*SRFGHQGYVEDA 361
L P ++CSR+G S+ GH G+ + A
Sbjct: 9 LMPATLCSRSGPPSSKHGHGGHAKRA 34
>07_01_0358 - 2631214-2632992
Length = 592
Score = 26.6 bits (56), Expect = 8.2
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 171 LRNKIAGFTTHLMRRLIHSQVRGISIKLQE-EERERRDNYVPEVSALEQDIIEVDSDT 341
LRN + F +M H + I L E ER RR+ Y+P S + DI E + +T
Sbjct: 465 LRNSVYEF---VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKET 519
>05_07_0360 +
29542854-29542900,29542988-29543129,29543207-29544529,
29544642-29544715,29545850-29545964,29546682-29546714
Length = 577
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 195 TTHLMRRLIHSQVRGISIKLQEEERERRDN 284
+T MRRLIH Q+R S ++++E D+
Sbjct: 207 STSNMRRLIHQQIRRSSSSESDKKKEDADD 236
>03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411
Length = 1311
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 86 DYNLRRFF-YGLSPNTTHDCGDVSCLNP 6
D+ L R + +G PNTTH G + L P
Sbjct: 496 DFGLARLYDHGTEPNTTHVVGTMGYLAP 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,728,365
Number of Sequences: 37544
Number of extensions: 199670
Number of successful extensions: 542
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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