Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B11
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   137   3e-33
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    31   0.34 
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    30   0.79 
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    29   1.0  
U13876-13|AAA21172.3|  370|Caenorhabditis elegans Prion-like-(q/...    29   1.0  
U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    27   5.5  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    27   5.5  
Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U58756-5|AAY44006.1|  288|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    26   9.7  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  137 bits (331), Expect = 3e-33
 Identities = 67/115 (58%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
 Frame = +3

Query: 36  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 215
           M RVRT             YYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR
Sbjct: 1   MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRR 60

Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQD---IIEVDSDTKDMLKMLDFS 371
           +    VRGISIKLQEEERERRDNY+PE+S ++      I+VD+DT DMLK   F+
Sbjct: 61  IERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = +3

Query: 207 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNING 383
           +R L   +V  ++ ++  EE+ R       +++  QDI + D+  ++ML+ +  +N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 189 GFTTHLMRRLIHSQVRGISIKLQEEERE 272
           GFT  L  RLI +++R +   ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +3

Query: 204 LMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 314
           ++ R ++SQ+  +SI L+ E +ER+D+Y   + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218


>U13876-13|AAA21172.3|  370|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 46
           protein.
          Length = 370

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 291 PEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLPQPA 404
           P  SA+   +++ DS  K   K  +F+  NG++ P+PA
Sbjct: 170 PAASAVATAVVDTDSSAK---KATEFNKANGIEQPKPA 204


>U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical
           protein C56G3.1a protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 185 NFVAKRLSRNDSNFLTYPFIGI 120
           N+  + +S N SN+LTYPF G+
Sbjct: 8   NYCDRGISPNASNYLTYPFDGL 29


>U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical
           protein C56G3.1b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 185 NFVAKRLSRNDSNFLTYPFIGI 120
           N+  + +S N SN+LTYPF G+
Sbjct: 28  NYCDRGISPNASNYLTYPFDGL 49


>U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical
           protein F58F9.9 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -2

Query: 412 PCVAGCGSCRPLM----LLKSSIFNISLVSESTSMISCS 308
           PC   CGSC  ++     L ++I N + V ++T  I C+
Sbjct: 41  PCPTNCGSCAKILYTRKCLSTNIPNCACVGDTTRYIPCN 79


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 162 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 278
           T  L NK AG    L R+    + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 162 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 278
           T  L NK AG    L R+    + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical
           protein W04G5.4 protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 287 IIVTPFTLLFLKLNRDSSHLGVYET 213
           II TP T    ++ RDS+  G Y T
Sbjct: 282 IIFTPLTNAIFRIRRDSNEAGPYST 306


>U58756-5|AAY44006.1|  288|Caenorhabditis elegans Hypothetical
           protein F58F9.8 protein.
          Length = 288

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -2

Query: 412 PCVAGCGSCRPLM----LLKSSIFNISLVSESTSMISCS 308
           PC   CGSC  ++     L ++  N + V ++T  I C+
Sbjct: 41  PCPTNCGSCAKILYTRKCLSTNFPNCACVGDTTRYILCN 79


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 223 TPRCEESLLSFKKRSVKGVTIMSQKYLL*N 312
           T +CEE L+ F ++ +K    +++KY L N
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQLEN 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,294,294
Number of Sequences: 27780
Number of extensions: 179172
Number of successful extensions: 557
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)