Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B11
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          20   10.0 

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 306 LEQDIIEVDSDTKDMLKMLDFSNINGLQLPQPATQ 410
           L+QDI+ + +D       +  S  N    P+P  +
Sbjct: 360 LKQDILNLRTDISSSSSSISSSEENDFWQPKPTLE 394


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +3

Query: 159 PTKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD 338
           P  P  +K +  TT  +++ +        IK  E      D+  PE    E++  ++D D
Sbjct: 276 PATPKGSKCSMITTPEIKKEVEDMEYD-DIKT-ELSTGMNDDIPPETEEEEENDKKLDLD 333

Query: 339 TKDMLKM 359
           + DM+++
Sbjct: 334 SIDMMQL 340


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 125 GIEVKSKPSVVFFDYNLRRFFYGLSPNTT 39
           GI  K     V++DY    +F  LSPN T
Sbjct: 60  GIHRKKVLLSVWWDYKGIVYFELLSPNRT 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,664
Number of Sequences: 438
Number of extensions: 2394
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)