Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B10
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   2.1  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    26   2.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   3.7  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   6.5  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   6.5  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    24   8.6  

>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 152 RTSRTERPILACFIAFLFVNS 90
           + SRTER +L C I F FV S
Sbjct: 772 KNSRTERFVLRCTIFFFFVAS 792


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 19  WXRVIGNSFTIKYYYSLISTIGRILFTNKKAIKQAKI 129
           W  VI    +I  YY +I + GR + TN+K +KQ ++
Sbjct: 55  WSSVI---VSITAYYVIILS-GRAIMTNRKPLKQRRL 87


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 126 DWSLGPRCSINQFNKINLFV 185
           DW+   R   N+FNK N F+
Sbjct: 320 DWAKSVRLCANRFNKSNFFI 339


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 185 YKKIDFIKLIYRTSRTERPILACFIAFLFV 96
           +K  DF   ++ +S T  PIL+  +A  F+
Sbjct: 218 WKYADFFHNVWSSSSTSVPILSVVLALFFI 247


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 364 PISHYAESNFILSFT 408
           PISHYA SN  LS T
Sbjct: 345 PISHYAPSNSTLSST 359


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 28  VIGNSFTIKYYYSLISTI--GRILFTNKKAIKQAKIGLSVLD 147
           V+G   T K YY L STI   R    N++ +++ K  + V++
Sbjct: 65  VMGQYLTAKAYYGLASTILDFRFKIENEEILRKHKSAVLVVN 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,771
Number of Sequences: 5004
Number of extensions: 30799
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)