Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B10
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871           27   6.3  
02_05_0725 - 31247066-31247158,31247499-31247528,31247688-312477...    27   8.3  
02_02_0255 + 8357963-8358356,8358948-8359024,8359201-8359276,835...    27   8.3  

>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
          Length = 177

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 223 PRPLDIPCPRSCPYVC*P 276
           P P  +PCP  CP  C P
Sbjct: 135 PPPCPLPCPPPCPLPCPP 152


>02_05_0725 -
           31247066-31247158,31247499-31247528,31247688-31247736,
           31247781-31247980,31248128-31248241,31248353-31248489,
           31248597-31248707,31249608-31249860,31249959-31250025,
           31250058-31250113,31250324-31250560
          Length = 448

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 182 KKIDFIKLIYRTSR--TERPILACFIAFLFVNSILPM 78
           KK+ F K +Y T      R I++ F  F F + +LPM
Sbjct: 325 KKVSFWKKLYMTYDFFIARRIISTFFTFFFFSVLLPM 361


>02_02_0255 +
           8357963-8358356,8358948-8359024,8359201-8359276,
           8359665-8359846,8360173-8360318,8360405-8360669,
           8360688-8361053,8361265-8361513
          Length = 584

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 158 IYRTSRTERPILACFIAFLFVNSILPMVEI 69
           ++ + RT+ P+  CF+AFL     L MV I
Sbjct: 547 LFTSFRTDFPLWTCFVAFLLYPLSLIMVYI 576


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,952,659
Number of Sequences: 37544
Number of extensions: 168434
Number of successful extensions: 260
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)