Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B08
(433 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 28 0.70
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 27 1.6
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 2.2
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 3.8
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 3.8
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 5.0
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 5.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 5.0
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 24 8.7
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 24 8.7
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 24 8.7
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 27.9 bits (59), Expect = 0.70
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +2
Query: 221 TQNTLLDKMVTKYWKRPKYYVEDPYTPYHTRNEYHSTRKTPL 346
T N + T Y+K+P ++ PY+ + Y+ + P+
Sbjct: 647 THNPFQSQQATGYYKQPMQQQQNMQQPYYNQQNYNYQNQQPM 688
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 179 SQKRRLRQHVFCNATQNTLLDKMVTKYWKRPKY 277
+ K LR H C+ L +K ++ W P Y
Sbjct: 228 NMKHILRAHQLCSEGYQILFEKKLSTVWSAPNY 260
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 2.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -2
Query: 108 KNLRTTALTVFLFPFLRLNL 49
KN++T +LT++L P++ N+
Sbjct: 1112 KNIKTPSLTIYLMPWIAANM 1131
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 93 TALTVFLFPFLRLNLVTGLEGTGASCR 13
T+L FL P+LRL++ G+E C+
Sbjct: 419 TSLVSFLNPWLRLDMTLGMELLFQECK 445
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 337 LSSAMILISRVIWCVRVLYIILWSLPIFCYHFI 239
LS + S +C +L + + LP+F HF+
Sbjct: 265 LSQKSLPYSLTTFCASILVLSFFQLPLFADHFL 297
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 117 IGEDGSEQRLADKKKCGKSLYPKK 188
+ ED S RLA KKK G+ +K
Sbjct: 949 VREDSSSDRLAPKKKIGRDYSKEK 972
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 301 WCVRVLYIILWSLPIFCY 248
WCV VL I L LP F Y
Sbjct: 1284 WCVTVLTIALCLLPRFSY 1301
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 305 DMVCKGPLHNTLVSSNILLPFYLVEYSVWHYK 210
D+ CK P + SSN+ L +S WH K
Sbjct: 1198 DIACKFPNESNACSSNV-LEHVASSFSKWHSK 1228
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 158 KMWKKSLSQKRRLRQHV-FCNATQNTLLDKMVTKYWK 265
K K+L + + F T++T +KMV K WK
Sbjct: 194 KFLSKTLDSNSLTHEKIEFATITKDTTKNKMVCKIWK 230
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 75 LFPFLRLNLVTGLEGTGASCRIPA 4
LFP LNL+ G GTG S + A
Sbjct: 29 LFPGPYLNLIIGPNGTGKSTIVSA 52
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 152 QKKMWKKSLSQKRRLRQHVFCNATQ 226
Q+K K+ + K+ ++QH NATQ
Sbjct: 51 QEKRRKEKIQMKKTIKQHEERNATQ 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,888
Number of Sequences: 5004
Number of extensions: 37121
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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