Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B08
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0932 + 26059121-26059366,26059450-26059566,26060843-26060920 33 0.13
10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430 29 1.2
06_03_0588 + 22567820-22570802,22570917-22571269 29 1.2
07_01_0653 - 4897188-4897270,4897405-4897630,4897750-4897793,489... 28 3.7
12_01_0107 - 843820-846335,846400-846511 27 4.9
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80... 27 4.9
11_04_0172 - 14474674-14474761,14474842-14475012,14475090-144755... 27 6.5
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 27 6.5
04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047 27 6.5
>06_03_0932 + 26059121-26059366,26059450-26059566,26060843-26060920
Length = 146
Score = 32.7 bits (71), Expect = 0.13
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 32 PSRPVTKFSLKKG-KRKTVKAVVRRFFRLHWGGWIRTKAGRQKKMWKKSLSQKRRLRQHV 208
PS + KG K KT KA +RF G +R +AG+Q + KK+ +++RL + +
Sbjct: 63 PSSASAVVAAGKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLSKKNTKRRKRLSKMI 122
Query: 209 FCN 217
N
Sbjct: 123 QVN 125
>10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430
Length = 156
Score = 29.5 bits (63), Expect = 1.2
Identities = 25/82 (30%), Positives = 38/82 (46%)
Frame = +2
Query: 2 AAGIRHEAPVPSRPVTKFSLKKGKRKTVKAVVRRFFRLHWGGWIRTKAGRQKKMWKKSLS 181
AA R AP R T +KK K K ++ RF ++ G R +AG++ KS
Sbjct: 74 AAKDRSRAP---RTPTTSKVKKYKIKPPSSMKFRFRVMNDGQVRRWRAGKRHNAHLKSKE 130
Query: 182 QKRRLRQHVFCNATQNTLLDKM 247
KRRLR+ + ++ K+
Sbjct: 131 AKRRLRKPALVHLAYAKVIKKL 152
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 180 DKDFFHIFFCLPAFVLIHPPQCNLKNLRTTALTVFLFPFLRLNLVTGLEGT 28
D+D +CL + PP+ + R+T V+ F L L +VT + T
Sbjct: 975 DQDSLTSLYCLKGSIGYIPPEYGMSEERSTKGDVYSFGVLLLEMVTNISPT 1025
>07_01_0653 -
4897188-4897270,4897405-4897630,4897750-4897793,
4898281-4898500
Length = 190
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 60 SRKEKGRQSKLWCGDFSGYI-GEDGSEQRLADKKKCGKS 173
SR GR+ KL SG++ EDG + R D K GKS
Sbjct: 47 SRFVLGRRRKLPLQPLSGFLRAEDGRQPRAKDFKDSGKS 85
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 188 RRLRQHVFCNATQNTLLDK-MVTKYWKR---PKYYVEDPYTPYHTRNEYHSTRKTPLI 349
R L QH C +++LD ++ Y+ + P+Y DP++P H + YH P I
Sbjct: 605 RHLEQHP-CGFDGDSILDSDIIDSYYDQGNPPRYPPPDPFSPTH--SHYHCGHGQPHI 659
>11_01_0107 -
801148-803633,803727-803860,803990-804006,804321-804504,
804819-804883
Length = 961
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 188 RRLRQHVFCNATQNTLLDK-MVTKYWKR---PKYYVEDPYTPYHTRNEYHSTRKTPLI 349
R L QH C +++LD ++ Y+ + P+Y DP++P H + YH P I
Sbjct: 691 RHLEQHP-CGFDGDSILDSDIIDSYYDQGNPPRYPPPDPFSPTH--SHYHCGHGQPHI 745
>11_04_0172 -
14474674-14474761,14474842-14475012,14475090-14475517,
14478824-14478961,14479048-14479482,14479559-14479783,
14479860-14480159
Length = 594
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 269 VSSNILLPFYLVEYSVWHYKKHVVS 195
+ SN+ F +Y+ WHYKKH +S
Sbjct: 214 IGSNVPWKFGFPQYA-WHYKKHKLS 237
>10_07_0081 -
12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 197 RQHVFCNATQNTLLDKMVTKYWKRPKYYVEDPYTPYHTRNEYHSTRK 337
R VF A Q +LD T+ ++ V+ + + E+HST+K
Sbjct: 637 RTKVFLRAGQIAVLDSKRTEILEKAARIVQGRFRTFVACKEFHSTKK 683
>04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047
Length = 377
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 98 RRFFRLHWGGWIRTKAGRQKKMWKKSLSQKRRLRQHVFCNATQNTLLDKMVTKYWK 265
R + W ++ G Q+ + S+ ++HV TQ+TL +V K W+
Sbjct: 123 RHQLTIFWAPFLLLHLGGQETISAFSMEDSALWKRHVLNLLTQSTLAIYVVAKQWR 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,970,954
Number of Sequences: 37544
Number of extensions: 223058
Number of successful extensions: 646
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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