Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B08
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-7|CAA86518.2|  158|Caenorhabditis elegans Hypothetical pr...    74   5e-14
Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF478687-1|AAL78657.1|  776|Caenorhabditis elegans systemic RNAi...    29   1.4  
AF101305-9|AAF98593.3|  776|Caenorhabditis elegans Systemic rna ...    29   1.4  
Z78410-3|CAB01641.1|  555|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U13019-8|AAC24446.2|  238|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z81116-9|CAB03296.2|  466|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z46381-7|CAA86518.2|  158|Caenorhabditis elegans Hypothetical
           protein M01F1.6 protein.
          Length = 158

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 34/95 (35%), Positives = 53/95 (55%)
 Frame = +2

Query: 50  KFSLKKGKRKTVKAVVRRFFRLHWGGWIRTKAGRQKKMWKKSLSQKRRLRQHVFCNATQN 229
           +F  K G+++  + V+ RF RL+ G WI    GR K  + K  + ++    +  C   Q 
Sbjct: 36  RFDQKVGRKRPAQDVLDRFKRLNNGMWIHAHPGRHKLRYMKDETWQKTSLYYETCTKEQC 95

Query: 230 TLLDKMVTKYWKRPKYYVEDPYTPYHTRNEYHSTR 334
            +LDK++T YW RPK+Y  DPY+ Y+ R+   S R
Sbjct: 96  EILDKLMTPYWLRPKHYPNDPYSAYNVRHNVTSPR 130


>Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical
           protein T05H10.6b protein.
          Length = 414

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 209 FCNATQNTLLDKMVTKYWKRPKYYVEDPYTPYHTRNEYHSTRKT 340
           +C++ +  L+ +M T  ++   + + DP T Y TR E    RKT
Sbjct: 283 YCDSGKGPLMMEMAT--YRYHGHSMSDPGTSYRTREEIQEVRKT 324


>Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical
           protein T05H10.6a protein.
          Length = 397

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 209 FCNATQNTLLDKMVTKYWKRPKYYVEDPYTPYHTRNEYHSTRKT 340
           +C++ +  L+ +M T  ++   + + DP T Y TR E    RKT
Sbjct: 266 YCDSGKGPLMMEMAT--YRYHGHSMSDPGTSYRTREEIQEVRKT 307


>AF478687-1|AAL78657.1|  776|Caenorhabditis elegans systemic RNAi
           enabling proteinSID-1 protein.
          Length = 776

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -2

Query: 219 ALQKTCCLNRLFWDKDFFHIFFCLP---AFVLIHPPQCNLKNLRTTALTVF 76
           AL K C L   F   D +HIF  L     F+ +     +L N R T++ +F
Sbjct: 726 ALNKPCLLLGFFGSHDLWHIFGALAGLFTFIFVSFVDDDLINTRKTSINIF 776


>AF101305-9|AAF98593.3|  776|Caenorhabditis elegans Systemic rna
           interference defectiveprotein 1 protein.
          Length = 776

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -2

Query: 219 ALQKTCCLNRLFWDKDFFHIFFCLP---AFVLIHPPQCNLKNLRTTALTVF 76
           AL K C L   F   D +HIF  L     F+ +     +L N R T++ +F
Sbjct: 726 ALNKPCLLLGFFGSHDLWHIFGALAGLFTFIFVSFVDDDLINTRKTSINIF 776


>Z78410-3|CAB01641.1|  555|Caenorhabditis elegans Hypothetical
           protein C51E3.6 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 273 FGLFQYFVTILSSRVFCVAL 214
           FG + Y + I +S +FCVAL
Sbjct: 232 FGQYPYLIAICTSWIFCVAL 251


>U13019-8|AAC24446.2|  238|Caenorhabditis elegans Hypothetical
           protein T12A2.7 protein.
          Length = 238

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +2

Query: 146 GRQKKMWKKSLSQKRRLRQHVFCNATQNTLLDKMVTKYWKRPKYYVEDPYTPYHTRNEYH 325
           G  +K+W K L   +   +H+        L+D+   + + +    +ED  T  H   E  
Sbjct: 107 GVDRKLWAKVLRNAKAQNEHLLMRQINLELMDEYAAESYLQRNKVMEDLLT--HAEKELR 164

Query: 326 STRK 337
            T++
Sbjct: 165 KTKE 168


>Z81116-9|CAB03296.2|  466|Caenorhabditis elegans Hypothetical
           protein T06C12.10 protein.
          Length = 466

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 107 FRLHWGGWIRTKAGRQKKMWKKSLSQ 184
           F+L WGG IRT    QK     SLS+
Sbjct: 438 FKLSWGGRIRTSKNSQKVPEAVSLSK 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,847,723
Number of Sequences: 27780
Number of extensions: 214403
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)