Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B08
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   1.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.9  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 234 RVFCVALQKTCCLNRLFWDKDFFHIFF 154
           R+F ++ QKT  L    W+    HI +
Sbjct: 79  RMFLISQQKTSKLKIYKWNNQILHILW 105


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 234 RVFCVALQKTCCLNRLFWDKDFFHIFF 154
           R+F ++ QKT  L    W+    HI +
Sbjct: 62  RMFLISQQKTSKLKIYKWNNQILHILW 88


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -3

Query: 425 CFFFFSSLYHFYC 387
           C  FF   +H YC
Sbjct: 419 CSSFFQQFFHCYC 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,818
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)