Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B07
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 122 2e-29
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 115 3e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 71 9e-14
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 62 4e-11
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.091
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.12
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 0.85
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 1.5
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 2.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 2.6
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 4.5
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 6.0
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 6.0
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 7.9
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 122 bits (295), Expect = 2e-29
Identities = 52/76 (68%), Positives = 61/76 (80%)
Frame = +3
Query: 84 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 263
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 264 HVPRAVFVDLEPTVVD 311
+VPR+++VDLEP V+D
Sbjct: 61 YVPRSIYVDLEPNVID 76
Score = 103 bits (247), Expect = 1e-23
Identities = 45/63 (71%), Positives = 53/63 (84%)
Frame = +1
Query: 292 LNPL*LTMVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQC 471
L P + VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+IR++AD C
Sbjct: 70 LEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNC 129
Query: 472 TGL 480
+GL
Sbjct: 130 SGL 132
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 115 bits (277), Expect = 3e-27
Identities = 56/81 (69%), Positives = 62/81 (76%), Gaps = 5/81 (6%)
Frame = +3
Query: 84 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 248
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 249 TGAGKHVPRAVFVDLEPTVVD 311
TG GK VPR+++VDLEP V+D
Sbjct: 60 TGQGKFVPRSIYVDLEPNVID 80
Score = 102 bits (244), Expect = 3e-23
Identities = 42/63 (66%), Positives = 54/63 (85%)
Frame = +1
Query: 292 LNPL*LTMVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQC 471
L P + VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+RIR++AD C
Sbjct: 74 LEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNC 133
Query: 472 TGL 480
+GL
Sbjct: 134 SGL 136
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 70.9 bits (166), Expect = 9e-14
Identities = 33/76 (43%), Positives = 49/76 (64%)
Frame = +3
Query: 87 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 266
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 267 VPRAVFVDLEPTVVDD 314
+PRA+ +DLEP VV++
Sbjct: 61 IPRAILIDLEPRVVNN 76
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 62.1 bits (144), Expect = 4e-11
Identities = 31/76 (40%), Positives = 40/76 (52%)
Frame = +3
Query: 84 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 263
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 264 HVPRAVFVDLEPTVVD 311
+VPRAV VDLEP +D
Sbjct: 59 YVPRAVLVDLEPGTMD 74
Score = 58.4 bits (135), Expect = 5e-10
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +1
Query: 292 LNPL*LTMVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQC 471
L P + V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD +R+ A+ C
Sbjct: 68 LEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEAC 127
Query: 472 TGL 480
L
Sbjct: 128 DAL 130
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 31.1 bits (67), Expect = 0.091
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +1
Query: 124 SRSEMPAGSCIALSTASNLM--VRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSIL 294
SRS P + ++S A+ Q+T P+ V + TP T SS L S+ P+ SSSIL
Sbjct: 346 SRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPITSSSV---LNSSTPITSSSIL 402
Query: 295 N 297
N
Sbjct: 403 N 403
Score = 27.9 bits (59), Expect = 0.85
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 76 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 252
+T S+S+ + P + S + S ++++S L +T + + T TP T SS
Sbjct: 1929 STPITSSSVLNSSTPITSSTV-VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSV-- 1985
Query: 253 ELASTFPVPSSSILN 297
L S+ P+ SSS+LN
Sbjct: 1986 -LNSSTPITSSSVLN 1999
Score = 27.1 bits (57), Expect = 1.5
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +1
Query: 76 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPE 255
+T S+S+ + P + S + + ++++S L +T + V T+ S SS+
Sbjct: 2373 STSITSSSVLNSSTPITSSTV-VNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSS--V 2429
Query: 256 LASTFPVPSSSILN 297
L S+ P+ SSS+LN
Sbjct: 2430 LNSSTPITSSSVLN 2443
Score = 26.6 bits (56), Expect = 2.0
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 76 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 252
+T S+S+ + P + S + S +++++ L +T + + T TP T SS
Sbjct: 405 STPITSSSVLNSSTPITSSSI-LNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV-- 461
Query: 253 ELASTFPVPSSSILN 297
L S+ P+ SSS+LN
Sbjct: 462 -LNSSTPITSSSVLN 475
Score = 26.6 bits (56), Expect = 2.0
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 76 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 252
+T S+S+ + P + S + S ++++S L +T + V T TP T S+A
Sbjct: 1077 STPITSSSVLNSSTPITSSTV-LNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTA-- 1133
Query: 253 ELASTFPVPSSSILN 297
L ++ P+ SSS+LN
Sbjct: 1134 -LNTSTPITSSSVLN 1147
Score = 26.2 bits (55), Expect = 2.6
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 76 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 252
+T S+S+ + P + S + S ++++S L +T + V + TP T S+A
Sbjct: 1221 STPITSSSVLNSSTPITSSSI-LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTA-- 1277
Query: 253 ELASTFPVPSSSILN 297
L ++ P+ SSS+LN
Sbjct: 1278 -LNTSIPITSSSVLN 1291
Score = 26.2 bits (55), Expect = 2.6
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +1
Query: 76 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPE 255
+T S+S+ + P + S + S +++++ L +T S + ++ + SS+
Sbjct: 3177 STAITSSSIVNSSTPITSSSV-LNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSS--V 3233
Query: 256 LASTFPVPSSSILN 297
L S+ P+ SSS+LN
Sbjct: 3234 LNSSTPITSSSVLN 3247
Score = 26.2 bits (55), Expect = 2.6
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +1
Query: 91 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTF 270
S +L T S S + + + I STA N +T S + ++ + SS+ L S+
Sbjct: 3303 STTLNTSTPITSSSVLNSSTAITSSTALNTST--PITSSSVLNSSTAITSSSI--LNSST 3358
Query: 271 PVPSSSILN 297
PV SSS+LN
Sbjct: 3359 PVTSSSVLN 3367
Score = 25.8 bits (54), Expect = 3.4
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 91 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 267
S +L T S S + + + I ST N +T + + T TP T SS L S+
Sbjct: 1875 STALNTSTPITSSSVLNSSTPITSSTVLNSST--PITSSTALNTSTPITSSSV---LNSS 1929
Query: 268 FPVPSSSILN 297
P+ SSS+LN
Sbjct: 1930 TPITSSSVLN 1939
Score = 25.8 bits (54), Expect = 3.4
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 91 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 267
S +L T S S + + + I ST N +T + + T TP T SS L S+
Sbjct: 2067 STALNTSTPITSSSVLNSSTPITSSTVLNSST--PITSSTALNTSTPITSSSV---LNSS 2121
Query: 268 FPVPSSSILN 297
P+ SSS+LN
Sbjct: 2122 TPITSSSVLN 2131
Score = 25.8 bits (54), Expect = 3.4
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 76 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 252
+T S+S+ + P + S + + ++++S L +T + V T TP T S+A
Sbjct: 2721 STPITSSSVLNSSTPITSSTV-VNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTA-- 2777
Query: 253 ELASTFPVPSSSILN 297
L ++ P+ SSS+LN
Sbjct: 2778 -LNTSTPITSSSVLN 2791
Score = 25.4 bits (53), Expect = 4.5
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 91 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 267
S L T S S + + + I ST N +T + + T TP T SS L S+
Sbjct: 939 STGLNTSTPITSSSVLNSSTPITSSTVLNSST--PITSSTALNTSTPITSSSV---LNSS 993
Query: 268 FPVPSSSILN 297
P+ SSS+LN
Sbjct: 994 TPITSSSVLN 1003
Score = 25.4 bits (53), Expect = 4.5
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 76 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 249
+T S+S+ + P S S + + + I ST N +T S V + TP T S+A
Sbjct: 1533 STPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSSVVNSSTPITSSTA- 1589
Query: 250 PELASTFPVPSSSILN 297
L ++ P+ SSS+LN
Sbjct: 1590 --LNTSTPITSSSVLN 1603
Score = 25.0 bits (52), Expect = 6.0
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 130 SEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 297
S S ++++S L +T S + T TP T SS L S+ P+ SSSILN
Sbjct: 374 SPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSV---LNSSTPITSSSILN 427
Score = 24.6 bits (51), Expect = 7.9
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 76 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 249
+T S+++ + P S S + + + I ST N +TR S + + TP T S+
Sbjct: 549 STPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTST--PITRYSVLNSSTPITSSTV- 605
Query: 250 PELASTFPVPSSSILN 297
L S+ P+ SSS+LN
Sbjct: 606 --LNSSTPITSSSVLN 619
Score = 24.6 bits (51), Expect = 7.9
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 148 SCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 297
S ++++S L +T + + T TP T SS L S+ P+ SSS+LN
Sbjct: 608 SSTPITSSSVLNSSTPITSSTALNTSTPITSSSV---LNSSTPITSSSVLN 655
Score = 24.6 bits (51), Expect = 7.9
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 160 LSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 297
++++S L +T + + T TP T SS L S+ P+ SSSILN
Sbjct: 720 ITSSSVLNSSTPITSSTALNTSTPITSSSV---LNSSTPITSSSILN 763
Score = 24.6 bits (51), Expect = 7.9
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 76 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 249
+T S+S+ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 1989 STPITSSSVLNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 2045
Query: 250 PELASTFPVPSSSILN 297
L ++ P+ SSS+LN
Sbjct: 2046 --LNTSTPITSSSVLN 2059
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.12
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 124 SRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 297
S S + + + ST S+L ++PS T+ ST SSA P S+ + SSS+++
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVS 217
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 0.85
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +1
Query: 103 YTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPS 282
++ A+ + S+ + S + Q +PSGVE T ++R++A+ + ST + S
Sbjct: 12 FSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITS 71
Query: 283 SS 288
+
Sbjct: 72 EA 73
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 1.5
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +1
Query: 67 KKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 246
K LN V+ +A + S P+ +C + + + N + + TTP+T S
Sbjct: 82 KFLNKDFVTVDPLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASEN 141
Query: 247 RPELASTFPVPSSSILNPL*LT 312
+ + T P +S+ N L L+
Sbjct: 142 KKIESITIP-DHASVYNDLPLS 162
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 205 PSGVETTPSTRSSARPELASTFPV 276
P+ VETTPST +SA + + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 2.6
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 118 PESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 297
P S S + LST+S ++ T SG PST SS+ P +S P +S+L+
Sbjct: 483 PISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPST-SSSTPS-SSIISSPMTSVLS 540
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -3
Query: 450 DAVEDQVYDFLSNGVVT-TSIVVC 382
DA DQ+ +++ NG++T T IV C
Sbjct: 68 DATIDQLQNYMENGILTSTDIVHC 91
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 6.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 213 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 118
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 6.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 242 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGL 114
EE EG TP +T+R D+V++ + AG++D+ S L
Sbjct: 320 EEISEGEEYTPIEESKEPITVRRDSVIQIDESSAGLTDVISEL 362
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 370 KEDAANNYARGHYTIGKEIVDLV 438
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,681
Number of Sequences: 5004
Number of extensions: 47987
Number of successful extensions: 225
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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