Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B07
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   4.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.1  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 14/63 (22%), Positives = 25/63 (39%)
 Frame = +3

Query: 165 HGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDDGPHWHIQTVV 344
           H + P G+    K     ++  N   S+    K+  R  F  +EP + +      +   +
Sbjct: 116 HYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACI 175

Query: 345 SSR 353
           SSR
Sbjct: 176 SSR 178


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 147 PSRHFRSGLR 118
           P RH+RSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 429 YDFLSNGVVTTSIVVCGILLTSDKLFWMKQLSVCASADHRQLQWVQD 289
           Y+  +N V   +++VC +   +  L  +   SV     H Q + V D
Sbjct: 304 YNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVAD 350


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 429 YDFLSNGVVTTSIVVCGILLTSDKLFWMKQLSVCASADHRQLQWVQD 289
           Y+  +N V   +++VC +   +  L  +   SV     H Q + V D
Sbjct: 357 YNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVAD 403


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 402 SLHHWKGNRRLGPRPHP 452
           S HH  GN  +GP   P
Sbjct: 333 SPHHQHGNHTMGPTMGP 349


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 145 QQAFPIWTPA 116
           +QAFP W P+
Sbjct: 237 RQAFPFWLPS 246


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 145 QQAFPIWTPA 116
           +QAFP W P+
Sbjct: 237 RQAFPFWLPS 246


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 246 ETGAGKHVPRAVFVDLEPTVVDDGP 320
           E  A  H+    + D+EPTV    P
Sbjct: 236 ERRAQSHLEAHCYFDIEPTVQQHQP 260


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 277 ARGTCLPAPVSLKNVL 230
           A GTC   P  L+N++
Sbjct: 6   ATGTCQKKPTKLRNLI 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,850
Number of Sequences: 438
Number of extensions: 4029
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)