Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B06
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 177 5e-45
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 176 9e-45
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 96 2e-20
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 31 0.51
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37... 29 3.6
01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706 28 4.8
10_08_0139 + 15145310-15145622,15145820-15145881,15145975-151463... 28 6.3
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 177 bits (431), Expect = 5e-45
Identities = 83/157 (52%), Positives = 111/157 (70%)
Frame = +2
Query: 113 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 292
K VPESV + L + +++ RK IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 293 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 472
+L R+AR +G +YV EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 473 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKR 583
+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQR 163
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 176 bits (429), Expect = 9e-45
Identities = 82/153 (53%), Positives = 109/153 (71%)
Frame = +2
Query: 125 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 304
VPESV + + + SI+ RK IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 305 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 484
+AR +G +YV E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 485 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKR 583
R EPY+A+GYPNLKSVREL+YKRG+ KLN +R
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQR 162
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 95.9 bits (228), Expect = 2e-20
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Frame = +2
Query: 98 KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIK 277
+E +++LP V E+V + +R K KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 278 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGV 448
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 449 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRG 559
F++ AT+ L + EP+I +G+PNLK+V++L+YK+G
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKG 157
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -2
Query: 379 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 224
D TN +KC G+ A++ ++S QS I +LDA ++ G ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433
>11_01_0049 -
375049-375342,375596-375660,375907-375956,376492-376541
Length = 152
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 219 RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTVA 323
R+G KS+ P N K+ R +M S+ + L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142
>01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706
Length = 265
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 7 GTRAAWSFIPQHDGCDYRKEG 69
GTR +++ P HDG +RK G
Sbjct: 41 GTRTEYTYAPYHDGYQWRKYG 61
>10_08_0139 +
15145310-15145622,15145820-15145881,15145975-15146355,
15146413-15146929,15147031-15147161
Length = 467
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -2
Query: 379 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 224
DTTN +K G+ A++ ++S +S I +LDA ++ G ++ FP
Sbjct: 269 DTTNATNKLCKGPQGNQFAASLNNVSFESPAIDVLDAYYYGSGRGVYEEDFP 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,022,229
Number of Sequences: 37544
Number of extensions: 317848
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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