Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B06
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   183   1e-46
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    28   4.2  
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  183 bits (445), Expect = 1e-46
 Identities = 82/159 (51%), Positives = 117/159 (73%)
 Frame = +2

Query: 107 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 286
           +KK+P VPE+V               Q  +   + + +K+ + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 287 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNK 466
            +RL R+A  +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LNK
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123

Query: 467 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKR 583
           AT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK++G R
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNR 162


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/108 (17%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +2

Query: 188 ITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL-AFVI 364
           ++LK    ++KK +E      Q+VKE    E + ++   ++ N+ ++Y+   + + A  +
Sbjct: 1   MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWL 60

Query: 365 RIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 508
             +G  ++  ++  V+ +  L+ ++  V             + +P +A
Sbjct: 61  LTKGTMELMAEIH-VMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVA 107


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +3

Query: 204 VPLPLRRGK-----KSLREPNNMSKNTASRSVMKSD 296
           +PL +RR       KS+ +P N+  NTA  ++M SD
Sbjct: 25  IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60


>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 186 RSHSRGVPLPLRRGKKSLREPNNMSKN 266
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 233 RGNTKGLTAPLRHNFKSLRKRNGVGKS 259


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 186 RSHSRGVPLPLRRGKKSLREPNNMSKN 266
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 255 RGNTKGLTAPLRHNFKSLRKRNGVGKS 281


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 186 RSHSRGVPLPLRRGKKSLREPNNMSKN 266
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 257 RGNTKGLTAPLRHNFKSLRKRNGVGKS 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,411,780
Number of Sequences: 27780
Number of extensions: 269208
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)