Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B05
(244 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 138 6e-34
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 6e-34
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 138 6e-34
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 138 6e-34
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 138 6e-34
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 75 9e-15
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 75 9e-15
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 74 1e-14
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.012
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 34 0.015
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 34 0.015
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 34 0.015
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.027
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 32 0.047
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.047
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 32 0.047
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 31 0.082
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.082
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 30 0.19
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 30 0.19
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 0.58
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 0.58
Z71178-4|CAA94877.1| 390|Caenorhabditis elegans Hypothetical pr... 28 0.77
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 27 1.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 27 1.3
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 3.1
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr... 26 3.1
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 26 3.1
AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical ... 26 4.1
AF125446-1|AAY86267.1| 198|Caenorhabditis elegans Hypothetical ... 26 4.1
Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical pr... 25 7.1
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z99281-23|CAE18026.1| 302|Caenorhabditis elegans Hypothetical p... 25 9.4
Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z46267-7|CAA86429.2| 947|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical pr... 25 9.4
U80843-6|AAB37971.1| 345|Caenorhabditis elegans Skn-1 dependent... 25 9.4
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr... 25 9.4
AF039045-9|AAB94200.1| 315|Caenorhabditis elegans Hypothetical ... 25 9.4
AF016424-4|AAT68893.1| 152|Caenorhabditis elegans Hypothetical ... 25 9.4
AF016424-3|AAB65330.1| 251|Caenorhabditis elegans Hypothetical ... 25 9.4
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 138 bits (333), Expect = 6e-34
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGNGSFKYAWVL 230
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG GSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLK 242
DKLK
Sbjct: 61 DKLK 64
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (333), Expect = 6e-34
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGNGSFKYAWVL 230
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG GSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLK 242
DKLK
Sbjct: 61 DKLK 64
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 138 bits (333), Expect = 6e-34
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGNGSFKYAWVL 230
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG GSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLK 242
DKLK
Sbjct: 61 DKLK 64
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 138 bits (333), Expect = 6e-34
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGNGSFKYAWVL 230
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG GSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLK 242
DKLK
Sbjct: 61 DKLK 64
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 138 bits (333), Expect = 6e-34
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGNGSFKYAWVL 230
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG GSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLK 242
DKLK
Sbjct: 61 DKLK 64
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 74.5 bits (175), Expect = 9e-15
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +3
Query: 60 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGNGSFKYAWVLDK 236
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA G SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDE 225
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 74.5 bits (175), Expect = 9e-15
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +3
Query: 60 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGNGSFKYAWVLDK 236
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA G SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDE 243
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 74.1 bits (174), Expect = 1e-14
Identities = 31/60 (51%), Positives = 44/60 (73%)
Frame = +3
Query: 54 GKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGNGSFKYAWVLD 233
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.012
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGI 152
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 33.9 bits (74), Expect = 0.015
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGNG 206
++K H+N+ IGHVD GK+T T ++ G R E + +E G
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 97
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.015
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGNG 206
++K H+N+ IGHVD GK+T T ++ G R E + +E G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.015
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGNG 206
++K H+N+ IGHVD GK+T T ++ G R E + +E G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.027
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGID 155
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 32.3 bits (70), Expect = 0.047
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 30 VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 137
+IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.047
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 191
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 32.3 bits (70), Expect = 0.047
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 30 VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 137
+IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.082
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCG 146
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.082
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCG 146
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 30.3 bits (65), Expect = 0.19
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 63 KVHINIVVIGHVDSGKSTTT 122
K+++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 30.3 bits (65), Expect = 0.19
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 63 KVHINIVVIGHVDSGKSTTT 122
K+++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 0.58
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 72 INIVVIGHVDSGKSTTT 122
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 0.58
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 72 INIVVIGHVDSGKSTTT 122
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z71178-4|CAA94877.1| 390|Caenorhabditis elegans Hypothetical
protein B0024.4 protein.
Length = 390
Score = 28.3 bits (60), Expect = 0.77
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 127 T*STNAVVSTNVPSKSSRRKPRKWVTVPSNTLGYWT 234
T N V S + S P KWVT+P+N + W+
Sbjct: 278 TIGVNVVGSVPANANFSVTYPIKWVTIPTNIIQSWS 313
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 153 DKRTIEKFEKEAQEMGNGSFKYAWVLDKLK 242
+KR ++ EKE + N F Y LDK+K
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVK 301
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 153 DKRTIEKFEKEAQEMGNGSFKYAWVLDKLK 242
+KR ++ EKE + N F Y LDK+K
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVK 236
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 27 IVIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKC 143
+++R P+ ++ + + + V+G D GKST G L C
Sbjct: 155 VLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGC 192
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 45 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQE 194
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQE 1350
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 45 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQE 194
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQE 1350
>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
protein C01G5.4 protein.
Length = 1079
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 103 PASPQQLVT*STNAVVSTNVPSKSS 177
P+SPQQL NA STNV + S
Sbjct: 120 PSSPQQLHLAFANATTSTNVTNAKS 144
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 45 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQE 194
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQE 1350
>AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical
protein Y37H2A.6 protein.
Length = 410
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 33 IRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 137
IR+ K+GK K+ + ++ D GKS +L +
Sbjct: 11 IREAWKLGKNKIFLRACILYEYDQGKSVYESYLSF 45
>AF125446-1|AAY86267.1| 198|Caenorhabditis elegans Hypothetical
protein R05C11.4 protein.
Length = 198
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 93 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGN 203
H + K T L+ + G+ ++E FEKE Q+M N
Sbjct: 48 HCCASKLPPTNTLLKEKHGVYCCSLEDFEKEKQDMAN 84
>Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical
protein F56H9.4 protein.
Length = 390
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTGHL-IYKCGG 149
++K + +++IG +SGKST + I CGG
Sbjct: 40 RKKKALKLLIIGPGESGKSTIVKQVRILHCGG 71
>Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical
protein C38D4.8 protein.
Length = 190
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 54 GKEKVHINIVVIGHVDSGKSTTTGHL 131
G K +NIVV+G +SGK+T L
Sbjct: 12 GLGKKDVNIVVVGLDNSGKTTILNQL 37
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE 194
+I+ GH+D S GH +K GI E FE E ++
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQ 1671
>Z99281-23|CAE18026.1| 302|Caenorhabditis elegans Hypothetical
protein Y57G11C.43 protein.
Length = 302
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 78 IVVIGHVDSGKSTTTGHLIYK 140
I+V GH SGKST L K
Sbjct: 4 IIVTGHPSSGKSTVVDRLAKK 24
>Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical
protein F49E2.5c protein.
Length = 1030
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 109 SPQQLVT*STNAVVSTNVPSKSSRRK 186
SP Q T S N+V+ SKSS+RK
Sbjct: 493 SPSQHSTPSPNSVLLNGPQSKSSKRK 518
>Z46267-7|CAA86429.2| 947|Caenorhabditis elegans Hypothetical
protein F49E2.5b protein.
Length = 947
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 109 SPQQLVT*STNAVVSTNVPSKSSRRK 186
SP Q T S N+V+ SKSS+RK
Sbjct: 410 SPSQHSTPSPNSVLLNGPQSKSSKRK 435
>Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical
protein F49E2.5a protein.
Length = 1215
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 109 SPQQLVT*STNAVVSTNVPSKSSRRK 186
SP Q T S N+V+ SKSS+RK
Sbjct: 678 SPSQHSTPSPNSVLLNGPQSKSSKRK 703
>U80843-6|AAB37971.1| 345|Caenorhabditis elegans Skn-1 dependent
zygotic transcriptprotein 4 protein.
Length = 345
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 57 KEKVHINI-VVIGHVDSGKSTTTGHLIYKCGGI 152
+ K+H + ++G + GK+ HL KCG +
Sbjct: 132 RRKMHEALKYLLGKLFEGKTVKVNHLTIKCGNV 164
>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
protein C27A2.1 protein.
Length = 1076
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 81 VVIGHVDSGKSTTTGHLIYKCGGIDK 158
+++GH SGKS+ + CGG K
Sbjct: 46 MILGHNGSGKSSIICGICLACGGSPK 71
>AF039045-9|AAB94200.1| 315|Caenorhabditis elegans Hypothetical
protein F15E11.3 protein.
Length = 315
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3
Query: 204 GSFKYAWVLDK 236
GS KY WVLDK
Sbjct: 218 GSLKYIWVLDK 228
>AF016424-4|AAT68893.1| 152|Caenorhabditis elegans Hypothetical
protein F39G3.5b protein.
Length = 152
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 206 TVTHFLGFLLELFDGTFVDT 147
++THF+GF+ +G F++T
Sbjct: 21 SITHFVGFITICLNGYFLNT 40
>AF016424-3|AAB65330.1| 251|Caenorhabditis elegans Hypothetical
protein F39G3.5a protein.
Length = 251
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 206 TVTHFLGFLLELFDGTFVDT 147
++THF+GF+ +G F++T
Sbjct: 21 SITHFVGFITICLNGYFLNT 40
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,705,272
Number of Sequences: 27780
Number of extensions: 95426
Number of successful extensions: 351
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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