Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B05
         (244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   137   2e-35
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   137   2e-35
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.18 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.23 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   0.41 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   2.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   2.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   2.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   2.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   2.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    20   5.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          19   6.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   6.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    19   8.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   8.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   8.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  137 bits (332), Expect = 2e-35
 Identities = 62/64 (96%), Positives = 63/64 (98%)
 Frame = +3

Query: 51  MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGNGSFKYAWVL 230
           MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG GSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 231 DKLK 242
           DKLK
Sbjct: 61  DKLK 64


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  137 bits (332), Expect = 2e-35
 Identities = 62/64 (96%), Positives = 63/64 (98%)
 Frame = +3

Query: 51  MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGNGSFKYAWVL 230
           MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG GSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 231 DKLK 242
           DKLK
Sbjct: 61  DKLK 64


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.18
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 63  KVHINIVVIGHVDSGKST 116
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.23
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 72  INIVVIGHVDSGKST 116
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 0.41
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +2

Query: 2   HEARILHADCNP---*LTKNGQRK 64
           H A I+HAD  P    ++KNGQ K
Sbjct: 172 HNAGIVHADVKPKNILMSKNGQPK 195


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 153 DKRTIEKFEKEAQEMG 200
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 153 DKRTIEKFEKEAQEMG 200
           DK+   KFE+EA+++G
Sbjct: 112 DKKFRVKFEEEAKKLG 127


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 153 DKRTIEKFEKEAQEMG 200
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 227 YPSVFEGTVTHFLG 186
           YPS+ +GT ++ LG
Sbjct: 25  YPSIRQGTTSYCLG 38


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 168 RWYVCRYHRIC 136
           RW + ++HR+C
Sbjct: 186 RWDLGKFHRVC 196


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 222 WVLDKLK 242
           WVLDKLK
Sbjct: 1   WVLDKLK 7


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 115 QQLVT*STNAVVSTNVPSKSSRRKPRK 195
           ++L+T     VV  N+  K S  +PR+
Sbjct: 26  KRLITGDEKWVVYNNIKRKRSWSRPRE 52


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 115 QQLVT*STNAVVSTNVPSKSSRRKPRK 195
           ++L+T     VV  N+  K S  +PR+
Sbjct: 147 KRLITGDEKWVVYNNIKRKRSWSRPRE 173


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 93  HVDSGKSTTTGH 128
           H DSG++ + GH
Sbjct: 386 HSDSGENNSRGH 397


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 64 FSLPIFG 44
          FSLPIFG
Sbjct: 57 FSLPIFG 63


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 162 YVCRYHRICRSSDQLLW 112
           Y+  +   CR +DQ+L+
Sbjct: 268 YISDFVGSCRKTDQILY 284


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 162 YVCRYHRICRSSDQLLW 112
           Y+  +   CR +DQ+L+
Sbjct: 306 YISDFVGSCRKTDQILY 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,395
Number of Sequences: 438
Number of extensions: 1066
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)