Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B04
(237 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.19
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 0.44
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 0.44
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 0.76
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 1.0
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 1.3
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 24 2.3
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 24 3.1
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 24 3.1
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 24 3.1
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 24 3.1
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 23 4.1
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 23 5.4
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 23 7.1
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 22 9.4
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 22 9.4
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 22 9.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 22 9.4
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 0.19
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 80 HKAANMDA--IKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
H+ A+++ + ++ LEKD K + QQ ++NLR + + E+ E++
Sbjct: 224 HQEASLEKSQLSSQLSDAVLEKDALQRKVSSLSQQFTESNLRYQNIVAELSEMR 277
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +2
Query: 95 MDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
++ +KK +A++ EK K + ++ + +NEEV L+
Sbjct: 1354 LEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLK 1400
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 0.44
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 35 EQPVREAFILTRP*EHKAANMDA-IKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKV 211
E+P +E + E KAA D IKK ++ + + + D E+Q + + E+
Sbjct: 105 EKPEKEDLAVIES-EDKAAKPDGEIKKNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQK 163
Query: 212 NEEVRELQ 235
+++++EL+
Sbjct: 164 DKKIKELK 171
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 0.44
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 104 IKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
++K+++ KLE+ + K D + + L+ K+N +V EL+
Sbjct: 833 LRKQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELE 876
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 0.76
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 80 HKAA-NMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVN 214
HK+ N D++K+K++ E +N + K+ + + Q RD N +E N
Sbjct: 46 HKSLKNFDSVKRKVEIANDEGNNKLLKS-SPKAQTRDENTPSEFKN 90
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 1.0
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 107 KKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKV-NEEVREL 232
K+K+Q +K E+ + + E++ DA R EK+ NE V+++
Sbjct: 201 KRKLQWVKEERTMLANHLEALERKLIDARNRKEKILNEIVKQV 243
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 107 KKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRE 229
KK A K KDN KA QQ R+ NL+ + +++ ++
Sbjct: 181 KKSSDAWKERKDNEK-KAMLMRQQRREENLKKRRESKKSKK 220
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 24.2 bits (50), Expect = 2.3
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Frame = +2
Query: 134 EKDNAMDKADTSEQQARD----ANLRAEKV-NEEVRE 229
+K D DT+E+ A+D AN +AEKV +++V+E
Sbjct: 518 DKVEQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKE 554
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 101 AIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVREL 232
A+K ++ + L +N DT+ + +A+ + ++NE VR +
Sbjct: 283 AVKMIIERLGLLDENLAPIVDTNNVELTNASSQDRRINEGVRPI 326
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 103 DQKEDAGDEAGEGQCHGQG 159
+++ED GD GEG G+G
Sbjct: 200 EEEEDDGDGDGEGDGDGEG 218
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 87 ALCSYGLVKINASRT 43
ALC +GL K+N ++T
Sbjct: 368 ALCDFGLCKLNMAKT 382
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 98 DAIKKKMQAMKLEKDNAMDKADTSEQQARD 187
D +K+K++ KLE +N +K + + +D
Sbjct: 168 DIMKRKLETEKLEANNKEEKEEKEGKDDKD 197
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 134 EKDNAMDKADTSEQQARDANLRAEKVNEEVR 226
EK+NA+ + +Q DAN +VN ++
Sbjct: 996 EKENALIMMEEEMRQVNDANTELLRVNATLK 1026
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 23.0 bits (47), Expect = 5.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 83 KAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVR 226
K+ D KKK A + EK + K + EQ+A E+ E R
Sbjct: 15 KSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAALERKAERER 62
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 144 MPWTRQIPANSRLEMPT 194
+P +PANS L++PT
Sbjct: 269 LPSETSVPANSTLQVPT 285
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 153 TRQIPANSRLEMPTSV 200
T P NSR+ MP+SV
Sbjct: 754 TPMAPGNSRIVMPSSV 769
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/53 (18%), Positives = 31/53 (58%)
Frame = +2
Query: 77 EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
E K+ N+ + +K + + ++D +MD ++ + + D+N ++ ++ ++L+
Sbjct: 15 EKKSKNVASHGEKRKVKRKKEDLSMDGSNDGVKDSPDSNDDSQSKKKKKKKLK 67
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -1
Query: 120 CIFFLIASMLAALCSYGLVKINASRTGCSHGGASCRIPA 4
CI+ ++ ++ + +I+ +T CS G A C + A
Sbjct: 76 CIYDFSKRVVMSMTPFNNGEISVLQTLCSSGFAGCIVAA 114
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 37 TARS*GVYFDQTVRTQSRQHGRDQKEDA 120
TAR G QT S H R+ +DA
Sbjct: 284 TARKLGFASSQTKSAVSNNHSRNSSKDA 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,811
Number of Sequences: 5004
Number of extensions: 10763
Number of successful extensions: 41
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -