Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B04
(237 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 64 1e-11
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 64 1e-11
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 64 1e-11
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 64 1e-11
AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical ... 64 1e-11
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 64 1e-11
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 64 1e-11
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 33 0.036
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 29 0.33
Z98877-8|CAB63404.3| 475|Caenorhabditis elegans Hypothetical pr... 28 1.0
AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical ... 28 1.0
U39667-1|AAC69010.1| 188|Caenorhabditis elegans Hypothetical pr... 27 1.8
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 1.8
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 27 2.4
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 27 2.4
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 27 2.4
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z49071-7|CAA88880.2| 211|Caenorhabditis elegans Hypothetical pr... 26 4.1
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 26 4.1
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 26 4.1
AY275709-1|AAP31908.1| 211|Caenorhabditis elegans cell junction... 26 4.1
AL032635-3|CAB63374.1| 635|Caenorhabditis elegans Hypothetical ... 26 4.1
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 26 4.1
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 25 5.4
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 25 5.4
L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncog... 25 5.4
AY493414-1|AAR86713.1| 769|Caenorhabditis elegans LIN-45 isofor... 25 5.4
AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isofor... 25 5.4
AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein. 25 5.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 25 5.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 25 5.4
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 25 5.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 25 5.4
AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell... 25 5.4
Z75530-4|CAA99794.2| 357|Caenorhabditis elegans Hypothetical pr... 25 7.2
U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical pr... 25 7.2
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 25 7.2
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 25 7.2
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 25 9.5
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z54342-3|CAA91154.1| 394|Caenorhabditis elegans Hypothetical pr... 25 9.5
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 25 9.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 25 9.5
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 25 9.5
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 25 9.5
AL033514-34|CAA22113.1| 463|Caenorhabditis elegans Hypothetical... 25 9.5
AL033514-33|CAB54500.1| 480|Caenorhabditis elegans Hypothetical... 25 9.5
AF160492-1|AAD43347.1| 463|Caenorhabditis elegans DNA-binding p... 25 9.5
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 25 9.5
AC024208-1|AAF36054.2| 383|Caenorhabditis elegans Hypothetical ... 25 9.5
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = +2
Query: 95 MDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
MDAIKKKMQAMK+EKDNA+D+AD +E++ R + E+V EE+R+ Q
Sbjct: 1 MDAIKKKMQAMKIEKDNALDRADAAEEKVRQITEKLERVEEELRDTQ 47
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = +2
Query: 95 MDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
MDAIKKKMQAMK+EKDNA+D+AD +E++ R + E+V EE+R+ Q
Sbjct: 1 MDAIKKKMQAMKIEKDNALDRADAAEEKVRQITEKLERVEEELRDTQ 47
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = +2
Query: 95 MDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
MDAIKKKMQAMK+EKDNA+D+AD +E++ R + E+V EE+R+ Q
Sbjct: 1 MDAIKKKMQAMKIEKDNALDRADAAEEKVRQITEKLERVEEELRDTQ 47
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = +2
Query: 95 MDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
MDAIKKKMQAMK+EKDNA+D+AD +E++ R + E+V EE+R+ Q
Sbjct: 1 MDAIKKKMQAMKIEKDNALDRADAAEEKVRQITEKLERVEEELRDTQ 47
>AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical
protein Y105E8B.1f protein.
Length = 151
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = +2
Query: 95 MDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
MDAIKKKMQAMK+EKDNA+D+AD +E++ R + E+V EE+R+ Q
Sbjct: 1 MDAIKKKMQAMKIEKDNALDRADAAEEKVRQITEKLERVEEELRDTQ 47
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = +2
Query: 95 MDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
MDAIKKKMQAMK+EKDNA+D+AD +E++ R + E+V EE+R+ Q
Sbjct: 1 MDAIKKKMQAMKIEKDNALDRADAAEEKVRQITEKLERVEEELRDTQ 47
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = +2
Query: 95 MDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
MDAIKKKMQAMK+EKDNA+D+AD +E++ R + E+V EE+R+ Q
Sbjct: 1 MDAIKKKMQAMKIEKDNALDRADAAEEKVRQITEKLERVEEELRDTQ 47
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 32.7 bits (71), Expect = 0.036
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 110 KKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNE 217
K + M+ EK+N D +DTSE ++ D + EK E
Sbjct: 119 KNLTTMRKEKENKGDDSDTSEDESEDEDAEEEKKRE 154
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 29.5 bits (63), Expect = 0.33
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 77 EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVR 226
E K + KKK + K++KD +K E++ ++A R ++ +E +
Sbjct: 151 EEKRKEAEEKKKKDEEEKMKKDEERNKRKKEEEEKKEAKRREDEEKKEAK 200
>Z98877-8|CAB63404.3| 475|Caenorhabditis elegans Hypothetical
protein Y69H2.7 protein.
Length = 475
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +2
Query: 11 IRHEAPPCEQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDA 190
I+ PP V++A LT+P ++ N+ I+K+ Q ++EK+ + + ++ A+
Sbjct: 91 IKESPPPAVSSVKKAVNLTKP-VTQSINIQVIRKEDQC-QMEKNIKKNAKKSGKKSAKSG 148
Query: 191 N 193
N
Sbjct: 149 N 149
>AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical
protein Y75B8A.7 protein.
Length = 648
Score = 27.9 bits (59), Expect = 1.0
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +2
Query: 20 EAPPCEQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKA-DTSEQQA---RD 187
E PP ++PV L P E A K K + KLE++N K+ + S + A RD
Sbjct: 313 EEPPEDEPVLLGADLEEPKEESAFAKRQSKMKERIAKLEEENLAPKSWELSGEVAADQRD 372
Query: 188 ANLRAEK 208
N EK
Sbjct: 373 QNTLLEK 379
>U39667-1|AAC69010.1| 188|Caenorhabditis elegans Hypothetical
protein C18A11.6 protein.
Length = 188
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 83 KAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRE 229
K AN +A K + A KLE+DN + +QAR N+ K N E+ +
Sbjct: 93 KKANKEAKKAEKLAKKLEEDNLI-------EQARLDNVELFKFNREISD 134
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 83 KAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
K A+ DAI K MQA + + + D A ++L + N E ++L+
Sbjct: 4747 KVASSDAITKAMQASRDSAISVDFRQDRETVSAEKSDLNFKSTNSETQKLK 4797
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 26.6 bits (56), Expect = 2.4
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 35 EQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVN 214
EQ ++E I R E +AA + KK + ++ + D +++ +DAN + +
Sbjct: 1796 EQQLKE--IQVRLDEAEAAALKGGKKVIAKLEQRVRELESELDGEQRRFQDANKNLGRAD 1853
Query: 215 EEVRELQ 235
VRELQ
Sbjct: 1854 RRVRELQ 1860
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/73 (20%), Positives = 32/73 (43%)
Frame = +2
Query: 8 GIRHEAPPCEQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARD 187
G+R E Q +++ M I ++++ K E +A+D+A+ + +
Sbjct: 1506 GLRRENKSLSQEIKDLTDQLGEGGRSVHEMQKIIRRLEIEKEELQHALDEAEAALEAEES 1565
Query: 188 ANLRAEKVNEEVR 226
LRA+ ++R
Sbjct: 1566 KVLRAQVEVSQIR 1578
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 26.6 bits (56), Expect = 2.4
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 35 EQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVN 214
EQ ++E I R E +AA + KK + ++ + D +++ +DAN + +
Sbjct: 1796 EQQLKE--IQVRLDEAEAAALKGGKKVIAKLEQRVRELESELDGEQRRFQDANKNLGRAD 1853
Query: 215 EEVRELQ 235
VRELQ
Sbjct: 1854 RRVRELQ 1860
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/73 (20%), Positives = 32/73 (43%)
Frame = +2
Query: 8 GIRHEAPPCEQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARD 187
G+R E Q +++ M I ++++ K E +A+D+A+ + +
Sbjct: 1506 GLRRENKSLSQEIKDLTDQLGEGGRSVHEMQKIIRRLEIEKEELQHALDEAEAALEAEES 1565
Query: 188 ANLRAEKVNEEVR 226
LRA+ ++R
Sbjct: 1566 KVLRAQVEVSQIR 1578
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 26.6 bits (56), Expect = 2.4
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 35 EQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVN 214
EQ ++E I R E +AA + KK + ++ + D +++ +DAN + +
Sbjct: 1799 EQQLKE--IQVRLDEAEAAALKGGKKVIAKLEQRVRELESELDGEQRRFQDANKNLGRAD 1856
Query: 215 EEVRELQ 235
VRELQ
Sbjct: 1857 RRVRELQ 1863
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/73 (20%), Positives = 32/73 (43%)
Frame = +2
Query: 8 GIRHEAPPCEQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARD 187
G+R E Q +++ M I ++++ K E +A+D+A+ + +
Sbjct: 1509 GLRRENKSLSQEIKDLTDQLGEGGRSVHEMQKIIRRLEIEKEELQHALDEAEAALEAEES 1568
Query: 188 ANLRAEKVNEEVR 226
LRA+ ++R
Sbjct: 1569 KVLRAQVEVSQIR 1581
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +2
Query: 104 IKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
+KKK++A E + A+D A+ + + A+ N+R + +++RELQ
Sbjct: 1630 VKKKLEADINELEIALDHANKANEDAQ-KNIR--RYLDQIRELQ 1670
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +2
Query: 104 IKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
+KKK++A E + A+D A+ + + A+ N+R + +++RELQ
Sbjct: 1630 VKKKLEADINELEIALDHANKANEDAQ-KNIR--RYLDQIRELQ 1670
>Z49071-7|CAA88880.2| 211|Caenorhabditis elegans Hypothetical
protein T22C8.8 protein.
Length = 211
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 120 CIFFLIASMLAALCSYGLVKINASRTG 40
C+ + M+ ALCS +K + RTG
Sbjct: 25 CLVIAVGLMIVALCSTSWLKTGSFRTG 51
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +2
Query: 104 IKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
+KKK++A E + A+D A+ + + A+ N+R + +++RELQ
Sbjct: 1630 VKKKLEADINELEIALDHANKANEDAQ-KNIR--RYLDQIRELQ 1670
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +2
Query: 104 IKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
+KKK++A E + A+D A+ + + A+ N+R + +++RELQ
Sbjct: 130 VKKKLEADINELEIALDHANKANEDAQ-KNIR--RYLDQIRELQ 170
>AY275709-1|AAP31908.1| 211|Caenorhabditis elegans cell junction
protein VAB-9 protein.
Length = 211
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 120 CIFFLIASMLAALCSYGLVKINASRTG 40
C+ + M+ ALCS +K + RTG
Sbjct: 25 CLVIAVGLMIVALCSTSWLKTGSFRTG 51
>AL032635-3|CAB63374.1| 635|Caenorhabditis elegans Hypothetical
protein Y51A2A.5 protein.
Length = 635
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 134 EKDNAMDKADTSEQQARDANL 196
+KD ++ + DT +Q+A+D NL
Sbjct: 390 DKDESISEMDTVDQKAKDVNL 410
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = +1
Query: 121 GDEAGEGQ---CHGQGRYQRTAG*RCQPPC 201
G + G GQ C G+ +T G C+P C
Sbjct: 26 GGQVGGGQRLPCRGRNEEYKTCGTACEPSC 55
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 77 EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEK-VNEEVRELQ 235
E + A + ++ ++ M++EK+ ++ QQA ++ AE+ + E+ +L+
Sbjct: 504 EQQTAQIQNLQTQIYQMEVEKEEKVELVKVQLQQAAQSSSSAEEALRAEIEQLE 557
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 ANMDAIKKKMQAMKLEKDNAMDK--ADTSEQQARDANLRAEKVNEEVRE 229
A ++ ++ K+Q ++ EK NA++ A+ +Q A+ L+A+ EV +
Sbjct: 619 AEIEKLEAKLQEIEEEKKNALNASLAEKEQQTAQIQELQAQLHQLEVEK 667
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 77 EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEK-VNEEVRELQ 235
E + A + ++ ++ M++EK+ ++ QQA ++ AE+ + E+ +L+
Sbjct: 504 EQQTAQIQNLQTQIYQMEVEKEEKVELVKVQLQQAAQSSSSAEEALRAEIEQLE 557
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 ANMDAIKKKMQAMKLEKDNAMDK--ADTSEQQARDANLRAEKVNEEVRE 229
A ++ ++ K+Q ++ EK NA++ A+ +Q A+ L+A+ EV +
Sbjct: 619 AEIEKLEAKLQEIEEEKKNALNASLAEKEQQTAQIQELQAQLHQLEVEK 667
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = +2
Query: 11 IRHEAPPCEQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDA 190
++ E PP E EA +L H+ + Q LEK+ + + E + +
Sbjct: 60 VQEEKPPAEMTEAEAAMLAAKKRHEEEEAAKLLDYEQRRVLEKEQM--EQELRELKEKQE 117
Query: 191 NLRAEKVNEE 220
RAE+ +E
Sbjct: 118 KRRAEREEDE 127
>L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncogene
protein.
Length = 813
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 86 LCVLTVWSK*TPHERAVHTAEPRAEF 9
+ ++T W + + R +H EPR EF
Sbjct: 549 IAIITQWCEGSSLYRHIHVQEPRVEF 574
>AY493414-1|AAR86713.1| 769|Caenorhabditis elegans LIN-45 isoform 3
protein.
Length = 769
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 86 LCVLTVWSK*TPHERAVHTAEPRAEF 9
+ ++T W + + R +H EPR EF
Sbjct: 505 IAIITQWCEGSSLYRHIHVQEPRVEF 530
>AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isoform 2
protein.
Length = 813
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 86 LCVLTVWSK*TPHERAVHTAEPRAEF 9
+ ++T W + + R +H EPR EF
Sbjct: 549 IAIITQWCEGSSLYRHIHVQEPRVEF 574
>AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein.
Length = 813
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 86 LCVLTVWSK*TPHERAVHTAEPRAEF 9
+ ++T W + + R +H EPR EF
Sbjct: 549 IAIITQWCEGSSLYRHIHVQEPRVEF 574
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 25.4 bits (53), Expect = 5.4
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +2
Query: 83 KAANMDAIKKKM---QAMKLE--KDNAMDKADTSEQQARDANLRAEKVNEE 220
KAA DA+KK+ + KLE K +A DK E+ A +++KV+EE
Sbjct: 13064 KAAEADAVKKQKELNEKNKLEAAKKSAADKLKLEEESA----AKSKKVSEE 13110
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +2
Query: 83 KAANMDAIKKK---MQAMKLE-----KDNAMDKADTSEQQARDANLRAEKVNEEVREL 232
KAA DA+KK+ + KLE K A +K EQ+ +DA + + +E +L
Sbjct: 9906 KAAEADAVKKEKELAEKQKLESEAATKKAAAEKLKLEEQKKKDAETASIEKQKEQEKL 9963
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 25.4 bits (53), Expect = 5.4
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +2
Query: 83 KAANMDAIKKKM---QAMKLE--KDNAMDKADTSEQQARDANLRAEKVNEE 220
KAA DA+KK+ + KLE K +A DK E+ A +++KV+EE
Sbjct: 13064 KAAEADAVKKQKELNEKNKLEAAKKSAADKLKLEEESA----AKSKKVSEE 13110
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +2
Query: 83 KAANMDAIKKK---MQAMKLE-----KDNAMDKADTSEQQARDANLRAEKVNEEVREL 232
KAA DA+KK+ + KLE K A +K EQ+ +DA + + +E +L
Sbjct: 9906 KAAEADAVKKEKELAEKQKLESEAATKKAAAEKLKLEEQKKKDAETASIEKQKEQEKL 9963
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 89 ANMDAIKKKMQAMKLEKDN---AMDKADTSEQQARDANLRAEKVNEEVRE 229
A D ++KM + +KD DK D E++ +D RA+K E+ ++
Sbjct: 1040 AEADEQRRKMNVERAKKDEERAKKDKRDAEERRKKDEE-RAKKDKEDAKK 1088
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 233 GAHGLPH*PSRHG 195
G HG PH P RHG
Sbjct: 355 GRHGPPHCPGRHG 367
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 233 GAHGLPH*PSRHG 195
G HG PH P RHG
Sbjct: 383 GRHGPPHCPGRHG 395
>AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform a protein.
Length = 813
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 86 LCVLTVWSK*TPHERAVHTAEPRAEF 9
+ ++T W + + R +H EPR EF
Sbjct: 549 IAIITQWCEGSSLYRHIHVQEPRVEF 574
>Z75530-4|CAA99794.2| 357|Caenorhabditis elegans Hypothetical
protein C47E8.6 protein.
Length = 357
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = +2
Query: 104 IKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
++KK+ A+++ KD D+AD + + +E +Q
Sbjct: 69 VEKKLNAIQITKDRLKDRADKLSGELTKTRVELNAAQQERGRIQ 112
>U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical
protein C37A2.8a protein.
Length = 336
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 80 HKAANMDAIKKKMQAMKL---EKDNAMDKADTSEQQARDANLRAEKVNE 217
H +++ K+K + KL K MDKA E + LR EK+N+
Sbjct: 206 HMRLSLNENKRKEEIEKLLEMSKKTDMDKAKKKETEKHRDILRREKLNK 254
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 89 ANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVREL 232
A D + K+Q +++ D ++ +EQ+ARD N + ++ +V++L
Sbjct: 644 AEEDYVTFKVQLTQMDDDQLLE----NEQEARDRNNQIMQLRAQVQQL 687
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 89 ANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVREL 232
A D + K+Q +++ D ++ +EQ+ARD N + ++ +V++L
Sbjct: 600 AEEDYVTFKVQLTQMDDDQLLE----NEQEARDRNNQIMQLRAQVQQL 643
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical protein
F48F5.1 protein.
Length = 1291
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 77 EHKAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
E A A KKK + + EKD K ++Q+ +A AEK +E E Q
Sbjct: 883 EKSEARKVAEKKKDEQNQKEKDKLQAKL-RADQEKSEARKIAEKKKKEEDEAQ 934
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +2
Query: 14 RHEAPPCEQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSE 172
RH CE ++ T +H ++ +A++ Q KL ++ D+ D E
Sbjct: 2119 RHAVEICEMVIKWELFRTLKTDHIISDEEALEVDKQLDKLRTASSTDRFDFEE 2171
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +2
Query: 14 RHEAPPCEQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSE 172
RH CE ++ T +H ++ +A++ Q KL ++ D+ D E
Sbjct: 2125 RHAVEICEMVIKWELFRTLKTDHIISDEEALEVDKQLDKLRTASSTDRFDFEE 2177
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +2
Query: 14 RHEAPPCEQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSE 172
RH CE ++ T +H ++ +A++ Q KL ++ D+ D E
Sbjct: 2125 RHAVEICEMVIKWELFRTLKTDHIISDEEALEVDKQLDKLRTASSTDRFDFEE 2177
>Z54342-3|CAA91154.1| 394|Caenorhabditis elegans Hypothetical
protein C08H9.6 protein.
Length = 394
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 79 FLRSGQNKRLTNGLFTRRSLVPN 11
FL + Q K+LT+ +FT S+ PN
Sbjct: 61 FLSNHQLKKLTHFIFTSISIFPN 83
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +2
Query: 14 RHEAPPCEQPVREAFILTRP*EHKAANMDAIKKKMQAMKLEKDNAMDKADTSE 172
RH CE ++ T +H ++ +A++ Q KL ++ D+ D E
Sbjct: 2125 RHAVEICEMVIKWELFRTLKTDHIISDEEALEVDKQLDKLRTASSTDRFDFEE 2177
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +2
Query: 83 KAANMDAIKKK---MQAMKLE-----KDNAMDKADTSEQQARDANLRAEKVNEEVREL 232
KAA DA+KK+ + KLE K A +K EQ+ +DA + + +E +L
Sbjct: 9886 KAAEADAVKKEKELAEKQKLESEAATKKAAAEKLKLEEQKKKDAETASIEKQKEQEKL 9943
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 29 PCEQPVREAFILTRP*EH-KAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAE 205
P + RE+ + EH K + + + E+ AMD ++AR A+
Sbjct: 1094 PFDADWRESEVELECAEHMKELQACPFESERRRFAAERHRAMDHKKREAEEARRADEERR 1153
Query: 206 KVNEEVR 226
++ EEVR
Sbjct: 1154 RLEEEVR 1160
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +2
Query: 95 MDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAEKVNEEVRELQ 235
M+AIK++ + +K E++ + + + + + EKV E +++
Sbjct: 906 MEAIKEEEERVKAEREKVKKEEERLKAEEEKVKVEKEKVKAEEEKVK 952
>AL033514-34|CAA22113.1| 463|Caenorhabditis elegans Hypothetical
protein Y75B8A.35b protein.
Length = 463
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 98 DAIKKKMQAMKLEKDNAMDKADTSEQQARDANLR 199
+AIK + + E + MD A +EQQA D N +
Sbjct: 425 NAIKVVLNQITRELNRYMDGAKLAEQQAFDENFQ 458
>AL033514-33|CAB54500.1| 480|Caenorhabditis elegans Hypothetical
protein Y75B8A.35a protein.
Length = 480
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 98 DAIKKKMQAMKLEKDNAMDKADTSEQQARDANLR 199
+AIK + + E + MD A +EQQA D N +
Sbjct: 442 NAIKVVLNQITRELNRYMDGAKLAEQQAFDENFQ 475
>AF160492-1|AAD43347.1| 463|Caenorhabditis elegans DNA-binding
protein ZIP-1 protein.
Length = 463
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 98 DAIKKKMQAMKLEKDNAMDKADTSEQQARDANLR 199
+AIK + + E + MD A +EQQA D N +
Sbjct: 425 NAIKVVLNQITRELNRYMDGAKLAEQQAFDENFQ 458
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 29 PCEQPVREAFILTRP*EH-KAANMDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAE 205
P + RE+ + EH K + + + E+ AMD ++AR A+
Sbjct: 1086 PFDADWRESEVELECAEHMKELQACPFESERRRFAAERHRAMDHKKQEAEEARRADEERR 1145
Query: 206 KVNEEVR 226
++ EEVR
Sbjct: 1146 RLEEEVR 1152
>AC024208-1|AAF36054.2| 383|Caenorhabditis elegans Hypothetical
protein Y75B7B.1 protein.
Length = 383
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 47 REAFILTRP*EHKAAN-MDAIKKKMQAMKLEKDNAMDKADTSEQQARDANLRAE 205
+ A +T P + K+ MD + K + ++KDN MD+A + + ++A ++E
Sbjct: 143 KNATPITAPIDEKSKLLMDRLPTK-KPCPVQKDNGMDEASSFYTKPKEAKKKSE 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,739,852
Number of Sequences: 27780
Number of extensions: 70455
Number of successful extensions: 391
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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