Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B04
         (237 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   1.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   2.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.6  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    20   4.7  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    20   4.7  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    20   4.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 133 GEGQCHGQGRYQRTAG 180
           G   CH  G Y  TAG
Sbjct: 295 GRSACHSPGVYPSTAG 310


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
          protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 53 PHERAVHTAEPRAE 12
          PH R    AEP+AE
Sbjct: 56 PHPRLRREAEPKAE 69


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 172 FAGICLVHG 146
           F G CL+HG
Sbjct: 430 FGGSCLIHG 438


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 172 FAGICLVHG 146
           F G CL+HG
Sbjct: 430 FGGSCLIHG 438


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
          protein.
          Length = 283

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53 PHERAVHTAEPRAE 12
          PH R    AEP AE
Sbjct: 55 PHPRLRREAEPEAE 68



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53  PHERAVHTAEPRAE 12
           PH R    AEP AE
Sbjct: 111 PHPRLRREAEPEAE 124



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53  PHERAVHTAEPRAE 12
           PH R    AEP AE
Sbjct: 167 PHPRLRREAEPEAE 180



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53  PHERAVHTAEPRAE 12
           PH R    AEP AE
Sbjct: 195 PHPRLRREAEPEAE 208



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53  PHERAVHTAEPRAE 12
           PH R    AEP AE
Sbjct: 223 PHPRLRREAEPEAE 236


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
          protein.
          Length = 144

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53 PHERAVHTAEPRAE 12
          PH R    AEP AE
Sbjct: 56 PHPRLRREAEPEAE 69



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53  PHERAVHTAEPRAE 12
           PH R    AEP AE
Sbjct: 84  PHPRLRREAEPEAE 97



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53  PHERAVHTAEPRAE 12
           PH R    AEP AE
Sbjct: 112 PHPRLRREAEPEAE 125


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
          protein.
          Length = 199

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53 PHERAVHTAEPRAE 12
          PH R    AEP AE
Sbjct: 27 PHPRLRREAEPEAE 40



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53 PHERAVHTAEPRAE 12
          PH R    AEP AE
Sbjct: 55 PHPRLRREAEPEAE 68



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53  PHERAVHTAEPRAE 12
           PH R    AEP AE
Sbjct: 83  PHPRLRREAEPEAE 96



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53  PHERAVHTAEPRAE 12
           PH R    AEP AE
Sbjct: 111 PHPRLRREAEPEAE 124



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 53  PHERAVHTAEPRAE 12
           PH R    AEP AE
Sbjct: 167 PHPRLRREAEPEAE 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,249
Number of Sequences: 438
Number of extensions: 684
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)