Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B03
(327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 30 0.077
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 0.54
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 27 0.72
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 25 2.9
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 24 5.1
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 5.1
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 24 5.1
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 24 6.7
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 24 6.7
SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 6.7
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 24 6.7
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 24 6.7
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 24 6.7
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 24 6.7
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 23 8.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 23 8.8
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 23 8.8
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 23 8.8
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 30.3 bits (65), Expect = 0.077
Identities = 22/90 (24%), Positives = 41/90 (45%)
Frame = +2
Query: 11 LVSFKNGSKPRHLDIRMELRVLLVDSRVSRETRSLVVRVADLRQRNTAAVDHIMDACDHV 190
L S + +P + + L LL+ S+ ++R A+L R ++ + A D
Sbjct: 551 LKSIEEPVEPSYKKLICTLEWLLITSQTDE-----LLRFANLVYRFFLSIGELNSAYDLY 605
Query: 191 AHTATQVLEKLSSGNCEPDTEADYQHMAEL 280
H + L LSS + EP+ ++ ++ EL
Sbjct: 606 THIPSDALNTLSSSDGEPENDSKFRDAYEL 635
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 0.54
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 326 DGRHPALPANSDSSPKARPYA 264
D HPA P+N+ + +RPYA
Sbjct: 530 DQSHPAKPSNAQPADSSRPYA 550
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr
3|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 0.72
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +2
Query: 65 LRVLLVDSRVSRETRSLVVRVADLRQRNTA-AVDHIMDACDHVAHTATQVLEKLSSGNC- 238
+ LLV SR+S L+++V + N A + + + DH+ H+ + L L+ +
Sbjct: 810 IEYLLVVSRISLREPELILKVCQTKNINIAMLIGNWILLNDHINHSKDRKLNTLALSSLL 869
Query: 239 ---EPDTEADYQHMAELW 283
PD A + LW
Sbjct: 870 RTNHPDVLAVLDSIMNLW 887
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 2.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 129 QTSGRGIQLLLITSWMLVTTLLILLHRC-WRNCPVATV 239
Q R I LL+ W+ +TTL+ ++ W N T+
Sbjct: 26 QLRARNIPCLLLLFWLTLTTLIYVVESAIWSNPYAETI 63
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 24.2 bits (50), Expect = 5.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 135 RSATLTTRERVSRDTLESTRSTRNSILM 52
RS+ T +S+DTL R++ SILM
Sbjct: 551 RSSDFTAVSEMSKDTLTLGRNSLQSILM 578
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 24.2 bits (50), Expect = 5.1
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 8 DLVSFKNGSKPRHLDIRMELRVLLVDSRVSRETRSLVVRVADLRQRNTAAVDHIMDACDH 187
DL + S R + ++LR L DS + ++ + + +R++ A+ + + AC
Sbjct: 396 DLFEYVKDSILRVHERAIKLRTLS-DSIRADVAENIEMGINSIREQAAASSEVALAACSG 454
Query: 188 VAHTATQV 211
+ H A QV
Sbjct: 455 IKHNAEQV 462
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 52 HKDGITRASCRLESVPGDALPGRQGG 129
H G S LE +P D LP + GG
Sbjct: 236 HILGSNYKSALLEQIPADNLPAKLGG 261
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 23.8 bits (49), Expect = 6.7
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 110 SLVVRVADLRQRNTAAV-DHIMDACDHVAHTATQV 211
+L+++ D ++NT D IMDACD ++ T+ V
Sbjct: 11 TLILQATD--EKNTKEKWDVIMDACDQLSSTSGDV 43
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 23.8 bits (49), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 320 RHPALPANSDSSPKARPYAGNQLRYPVHSCH 228
+HPAL ++ S ++R GN Y HS H
Sbjct: 551 KHPALHSSRPSDSRSRSKFGND--YQSHSKH 579
>SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 97
Score = 23.8 bits (49), Expect = 6.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 37 APSFGHKDGITRASCRLESVPGDALPGRQGGRP 135
AP F H DG+T G + G GG+P
Sbjct: 31 APLFSHLDGMTPCPIDCGFAVGRSRGGGFGGKP 63
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 305 PANSDSSPKARPYAGNQLRYPV 240
PA+S SS KARP + + PV
Sbjct: 263 PASSSSSAKARPVSVPDMSSPV 284
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 91 SVPGDALPGRQGGRPPAEEYSCC*SHHGCL*PRCS 195
S+ + LP + P + +C + +GC+ RCS
Sbjct: 8 SLKAEILPSPRTSSPSSNFKTCVSNENGCINCRCS 42
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 23.8 bits (49), Expect = 6.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 92 VSRETRSLVVRVADLRQRNTAAVDHIMDACDHVAHTATQVL 214
V+R T +L+ AD T++ +H++ AC+ V+ Q++
Sbjct: 957 VARATTTLI-ETADGVVNGTSSFEHLIVACNGVSAATAQLV 996
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 114 RERVSRDTLESTRSTRNSILMSK 46
R+RVS+ +++ ++S NS+ SK
Sbjct: 298 RQRVSQSSIKESKSATNSLKKSK 320
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 23.4 bits (48), Expect = 8.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 317 HPALPANSDSSPKARPYAGNQLRYP 243
H L + +PK RP +G LR+P
Sbjct: 611 HDFLSKSLTVNPKQRPSSGELLRHP 635
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 23.4 bits (48), Expect = 8.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 250 GIRFTVATGQFLQHLCSSMSNVVTSIHDVINS 155
G FTV T ++ +CS + + HD+I +
Sbjct: 2497 GFVFTVPTMEYRNEVCSYLDLAMKLKHDLIRT 2528
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 23.4 bits (48), Expect = 8.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 208 LCSSMSNVVTSIHDVINSSCIPLPEVCHP 122
+C + + V +I D ++SS IP+ + HP
Sbjct: 258 VCGASNLAVDNIVDRLSSSGIPMVRLGHP 286
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 219 NCPVATVNRIPKLITSIWPSFGR*ITVSWQRWVS 320
N P ++R+P+ W SF R +S+ W S
Sbjct: 875 NDPQPHISRLPRCYEDGWQSFDRDDMLSFVIWSS 908
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,673
Number of Sequences: 5004
Number of extensions: 30605
Number of successful extensions: 104
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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