Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_B03
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1358 - 29548440-29549315 29 0.65
02_05_1175 - 34706870-34707616 29 0.65
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 29 0.86
01_05_0502 + 22771428-22771466,22772327-22772430,22773043-227731... 29 1.1
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 28 1.5
05_05_0149 - 22733703-22736216 28 2.0
08_02_0703 - 20188489-20190246 27 2.6
07_03_0591 + 19792694-19792738,19794190-19794509,19795104-197951... 27 2.6
04_03_0572 + 17310729-17310746,17312209-17312902,17312991-173134... 27 2.6
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 27 2.6
11_04_0407 + 17335773-17335777,17335930-17336635,17336844-173375... 27 3.5
01_06_0815 - 32178886-32178972,32179065-32179209,32179221-321793... 27 3.5
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 27 3.5
12_02_1010 + 25269721-25269787,25270162-25270308,25270407-252707... 27 4.6
07_03_0078 - 13147741-13148913 27 4.6
06_01_0559 - 3973261-3973778,3974694-3975591 27 4.6
03_05_0121 + 21013752-21014162,21014274-21015026,21016040-21016444 27 4.6
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 26 6.1
01_03_0029 - 11784446-11784756,11785295-11786576 26 6.1
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 26 8.0
11_06_0154 + 20707811-20708210,20709252-20709523 26 8.0
08_02_1579 + 27997714-27998199,27998718-27998789,27999073-279991... 26 8.0
05_07_0033 + 27197654-27198196,27198297-27198359,27198844-271989... 26 8.0
04_04_1347 + 32803664-32803796,32803891-32804093,32804202-328043... 26 8.0
02_03_0177 - 16017650-16019599 26 8.0
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 26 8.0
>06_03_1358 - 29548440-29549315
Length = 291
Score = 29.5 bits (63), Expect = 0.65
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 89 RVSRETRSLV--VRVADLRQRNTAAVDHIMDACD 184
+VSRET + V+ A R +TAA+D ++ CD
Sbjct: 252 KVSRETAKMAQWVKQASARMTHTAAIDDLLSDCD 285
>02_05_1175 - 34706870-34707616
Length = 248
Score = 29.5 bits (63), Expect = 0.65
Identities = 23/88 (26%), Positives = 35/88 (39%)
Frame = -2
Query: 323 GRHPALPANSDSSPKARPYAGNQLRYPVHSCHWTVSPTPV*QYEQRGHKHP*CDQQQLYS 144
GR A + +P+ P+ +R + T + YE++ K P
Sbjct: 161 GRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYEKKKRKKPSSAGAGAGP 220
Query: 143 SAGGLPP*RPGSASPGTLSSRQEARVIP 60
S+ G PP GSAS G +S +IP
Sbjct: 221 SSEGSPPPPGGSASGGGDTSASPQFIIP 248
>06_03_0436 +
20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 29.1 bits (62), Expect = 0.86
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +2
Query: 5 EDLVSFKNGSKPRHLDIRMELRVLLVDSRVSRETRSL-----VVRVADLRQRNTAAVDHI 169
++LV K G P HL + +L ++ R+S + + VV VA ++Q N +
Sbjct: 241 DELVETKIGEIPYHLACLLRKVILEIERRISTQAEHIRNIIPVVIVACMQQNN------L 294
Query: 170 MDACDHVAHTATQVLEKLSSGNCE 241
M A + + +VLE L+SG +
Sbjct: 295 MKAREEKYKSRIRVLEALASGTSD 318
>01_05_0502 +
22771428-22771466,22772327-22772430,22773043-22773129,
22773212-22773287,22773393-22773467,22773639-22773692,
22773745-22773918,22774002-22774061,22774135-22774251,
22774448-22774542,22774811-22775013,22775177-22775274,
22775451-22775587,22776154-22776219,22776300-22776465,
22776537-22776659,22776763-22776845,22776943-22777084,
22777334-22777363,22777587-22777657,22777742-22778333
Length = 863
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 125 VADLRQRNTAAVDHIMDACDHVAH-TATQVLEKLSSGNCEPDTEADYQHMAELWEMNH 295
V+ L + T V+H+++ CD V A + L LS+ + P +D + + ++ + H
Sbjct: 478 VSCLEGKRTELVEHVLNDCDIVGKILAAEKLSSLSTESTGPTIPSDGKSIPKIGNIGH 535
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 137 GGLP-P*RPGSASPGTLSSRQEARVIPSLCPNDGAC 33
GG P P +P S T V+PSLC DG C
Sbjct: 660 GGFPGPGQPSIVSTITADVMVPKLVLPSLCGEDGGC 695
>05_05_0149 - 22733703-22736216
Length = 837
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 223 QFLQHLCSSMSNVVTSIHDVINSSCIPLPE 134
Q +QHL +S+ N +IH +N++C L E
Sbjct: 381 QAVQHLGNSIQNGTQNIHKEMNAACSELAE 410
>08_02_0703 - 20188489-20190246
Length = 585
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +2
Query: 38 PRHLDIRMELRVLLVDSRVSRETRSLVVRVADLRQRNTAAVDHIMDACDHVAHTATQVLE 217
PR ++ ELRV + + +E V+RVA+ + AV + +A + V +
Sbjct: 185 PRAKEVA-ELRVAEAEEEMEKEKEVAVLRVAEAEEEKEVAVLRVAEAKEEEEEVVMVVAK 243
Query: 218 KLSSGNCEPDTEA 256
+ G+ E EA
Sbjct: 244 VVEKGD-EDQVEA 255
>07_03_0591 +
19792694-19792738,19794190-19794509,19795104-19795161,
19798000-19798056,19798373-19798440,19798454-19798543,
19798619-19798820,19798902-19798988,19799642-19799719,
19799815-19800040,19800260-19800483,19801988-19802014,
19802470-19802518,19802594-19802688,19802778-19802864,
19802973-19803100,19803198-19803294,19803563-19803788,
19803888-19804294
Length = 856
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 56 RMELRVLLVDSRVSRETRSLVVRVADLRQRNTAAVDHIMDACDHVAHTAT 205
R+ + + SRV R S VA+L RN V H+ D DH AT
Sbjct: 199 RLLREISISSSRVQRVNNSSAEFVANLNDRNVEIVQHMEDN-DHNIINAT 247
>04_03_0572 +
17310729-17310746,17312209-17312902,17312991-17313400,
17325755-17326063
Length = 476
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 317 HPALPANSDSSPKA-RPYAGNQLRYPVHSCHWTVSPT 210
HP+ P D R G LR P++S H+ SPT
Sbjct: 394 HPSRPLQPDLGEGGKRKGVGKPLRCPIYSFHYRWSPT 430
>02_05_0822 + 32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +2
Query: 89 RVSRETRSLVVRVADLRQRNTAAVDHIMDACDHVAHTATQV 211
++ ++++ LV+ +D+R R A D +++A +HV H T+V
Sbjct: 1087 KIIQDSKELVME-SDIRSRMQALKDQLVEAINHV-HKVTEV 1125
>11_04_0407 +
17335773-17335777,17335930-17336635,17336844-17337542,
17340710-17340724,17341479-17342126
Length = 690
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 114 WSSGWQTSGRGIQLLLITSWMLVTTLLIL 200
W GW++SG L+ + L+TT+L++
Sbjct: 62 WQLGWKSSGEANSLVKGLMFKLMTTILLI 90
>01_06_0815 -
32178886-32178972,32179065-32179209,32179221-32179386,
32179606-32179668,32179810-32179876,32180119-32180196,
32180315-32180447,32180759-32180829,32180956-32181017,
32181391-32181433,32181609-32181706,32182575-32182811,
32182880-32182955
Length = 441
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +3
Query: 108 APWSSGWQTSGRGIQLLLITSWMLVT----TLLILLHRCWRN 221
+P++ GW T R + WML+ ++L L +C++N
Sbjct: 160 SPFACGWSTKQRNFCTYSLNQWMLLKSCYHSMLALSLKCFKN 201
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 283 PKLGHMLVISFGIRFTVATGQFLQHLCSSMSNVVTSIHDVINSSCI 146
P++GH L+ V TG + H C + ++ S H ++SSC+
Sbjct: 2632 PEIGHALMR------LVMTGHEVPHACEVVELLILSYHFYMSSSCL 2671
>12_02_1010 +
25269721-25269787,25270162-25270308,25270407-25270783,
25271273-25271407,25272059-25272211,25272761-25272862,
25273380-25273550,25273659-25273738,25273860-25273917
Length = 429
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +3
Query: 78 LSTRECPGRRAPWSSGWQTSGRGIQLL 158
L R C R WS W G + LL
Sbjct: 357 LDARRCKALRPGWSKAWYREGAALSLL 383
>07_03_0078 - 13147741-13148913
Length = 390
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 126 WQTSGRGIQLLLITSWMLVTTLLILLHR 209
W G+ LL++ +W++V T L HR
Sbjct: 260 WVVRVYGVPLLVVNAWLVVVTYLHHTHR 287
>06_01_0559 - 3973261-3973778,3974694-3975591
Length = 471
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 259 ISFGIRFTVATGQFLQHLCSSMSNVVTSIHDVI 161
+ F IR GQFL H S + +VV I V+
Sbjct: 292 LPFYIRHNAVAGQFLSHKASGILSVVFDIGGVL 324
>03_05_0121 + 21013752-21014162,21014274-21015026,21016040-21016444
Length = 522
Score = 26.6 bits (56), Expect = 4.6
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = -2
Query: 311 ALPANSDSSPKARPYAGNQ--LRYPVHSCHWTVSPTPV*QYEQRGHKHP*CDQQQL-YS- 144
A P ++ SSP +P+A N ++P HS VSPT Q HP + L Y
Sbjct: 241 ATPFSAPSSPWGKPFARNAQFFQFP-HSS--PVSPTTPTGPVQ---VHPVTPELSLGYGL 294
Query: 143 SAGGLPP*RPGSASPGTLSSRQEARVIPSLCPNDGA 36
AG P S SPG + +++ PS+ P A
Sbjct: 295 HAGDRARLPPVSPSPGARAELPSSQLRPSMAPTTAA 330
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -3
Query: 259 ISFGIRFTVATGQFLQHLCSSMSNVVTSI-HDVINS-SCIPLPEVCHPD 119
+ FG+ ++ TG QH+ S+ +V +I H+V+++ + PL + C D
Sbjct: 1526 LPFGMGDSLETGVSSQHVIISIDKIVFTITHEVLDTGNVFPLVQNCIND 1574
>01_03_0029 - 11784446-11784756,11785295-11786576
Length = 530
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 314 PALPANSDSSPKARPYAGNQLRYPVHSCHWTVSPTP 207
P LPA SDS +A Y Q P H+ + P
Sbjct: 234 PPLPAESDSEAEAAAYRAAQHPKPAALAHFLATVLP 269
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 205 CSSMSNVVTSIHDVINSSCIPLPEVC 128
C + + S+ D + SSC P E+C
Sbjct: 359 CDGLPLALVSVSDYLKSSCEPTGELC 384
>11_06_0154 + 20707811-20708210,20709252-20709523
Length = 223
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 162 STAAVFLCRRSATLTTRERVSRDTLESTRSTRNSIL 55
ST VF+ +SAT+TTR RD E++ S R ++
Sbjct: 113 STCIVFVFWKSATMTTR----RDRQEASASNRQFLI 144
>08_02_1579 +
27997714-27998199,27998718-27998789,27999073-27999120,
27999203-27999357,27999477-27999671,27999743-27999854,
27999955-28000024,28000110-28000168,28000251-28000374,
28000465-28000535,28001053-28001154,28001242-28001322,
28001504-28001662,28001757-28001807
Length = 594
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 113 GSASPGTLSSRQEARVIPSLCPNDGAC 33
G G++S Q V+ + CP GAC
Sbjct: 205 GEFVTGSISDEQRKNVLRNSCPGAGAC 231
>05_07_0033 +
27197654-27198196,27198297-27198359,27198844-27198993,
27199079-27199150
Length = 275
Score = 25.8 bits (54), Expect = 8.0
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = -2
Query: 302 ANSDSSPKARPYAGNQLRYPVHSCHWTVSPTPV*QYEQRGHKHP*CDQQQLYSSAGGLPP 123
A + SSP A P AG+ R +HS + PT + H+ C + + A PP
Sbjct: 15 AQAKSSPSAAPPAGSATRTRLHSFSF---PT---TFGWGTHRLLRCSKNGDSAPASASPP 68
Query: 122 *RPGSASP 99
+P + SP
Sbjct: 69 KQPHTPSP 76
>04_04_1347 +
32803664-32803796,32803891-32804093,32804202-32804383,
32804514-32804798,32804901-32804959,32805052-32805088,
32805186-32805257,32805336-32806005
Length = 546
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 268 MLVISFGIRFTVATGQFLQHLCSSMSNVVTSIHDVINSSCIPLPE-VCHP 122
+L + F + V G F+ + MS +H+V+ +C+ + + V HP
Sbjct: 291 ILGLRFLVSLLVIAGWFVLVITIMMSAAFLLLHNVVADTCVAMDDWVTHP 340
>02_03_0177 - 16017650-16019599
Length = 649
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 182 DHVAHTATQVLEKLSSGNCEPDT 250
+++ +A +VLE++ CEPDT
Sbjct: 340 NNLVDSAVEVLEQMEKYGCEPDT 362
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 149 YSSAGGLPP*RPGSASPGTLSSRQEARVIPS 57
Y S GLP P + + GTL+S Q PS
Sbjct: 858 YQSQAGLPQEHPQNLTEGTLNSSQTTPSQPS 888
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,066,652
Number of Sequences: 37544
Number of extensions: 255761
Number of successful extensions: 794
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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