Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_B01
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   243   5e-65
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   242   1e-64
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   151   2e-37
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    51   4e-07
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192           31   0.67 
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293     31   0.67 
06_02_0197 - 12912818-12913411,12913505-12913732                       30   1.2  
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984...    27   6.3  
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140...    27   8.3  

>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  243 bits (595), Expect = 5e-65
 Identities = 111/149 (74%), Positives = 126/149 (84%)
 Frame = +3

Query: 15  RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 194
           R  ++ MGK RG+   RK   HRR QRWADK +KK+H+G  WK  PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223

Query: 195 VGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGD 374
           +G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGD
Sbjct: 224 IGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGD 283

Query: 375 IPGVRFKVVKVANVSLLALYNEKKERPRS 461
           IPGVRFKVVKV+ VSLLAL+ EKKE+PRS
Sbjct: 284 IPGVRFKVVKVSGVSLLALFKEKKEKPRS 312



 Score =  238 bits (583), Expect = 2e-63
 Identities = 108/141 (76%), Positives = 121/141 (85%)
 Frame = +3

Query: 33  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
           MGK RG+   RK   HRR QRWADK +KK+H+G  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
           QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 393 KVVKVANVSLLALYNEKKERP 455
           KVVKV+ VSLLAL+ EKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140


>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  242 bits (592), Expect = 1e-64
 Identities = 110/143 (76%), Positives = 123/143 (86%)
 Frame = +3

Query: 33  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
           MGK RG+   RK   HRR QRWADK +KK+H+G  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
           QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 393 KVVKVANVSLLALYNEKKERPRS 461
           KVVKV+ VSLLAL+ EKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  151 bits (367), Expect = 2e-37
 Identities = 72/112 (64%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
 Frame = +3

Query: 12  DRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVL 188
           +RVRA   G K  G+   RK   HRR QRWADK +KK+H G  WK  PF G+SHAKGIVL
Sbjct: 64  ERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVL 122

Query: 189 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 344
           EK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+   V G
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +3

Query: 324 DEVLVAGFGRKGHAVGDIPGVRFKVVK 404
           DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67  DEVLISGFGHKGHAVGDIRGVRFEVVK 93


>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
          Length = 283

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 11  RSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 124
           R+C R  +G  +GY HG + +  SSR +  R G+  +P
Sbjct: 184 RACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220


>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
          Length = 352

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -3

Query: 406 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 275
           TL+ LNL  G SP   P  P P  +     SM + QP   TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297


>06_02_0197 - 12912818-12913411,12913505-12913732
          Length = 273

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 249 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 151
           V +H   WL +A+ LQR +FR     H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217


>02_02_0401 +
           9847398-9847463,9848916-9849019,9849873-9849876,
           9849968-9851230
          Length = 478

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 11  RSCSRYRNG*TSGYSHGAQARESSSRAAMGRQG 109
           R+ S+Y+ G +S Y  GA ++     ++  +QG
Sbjct: 283 RTSSKYKQGASSKYKQGASSKSKQGTSSKSKQG 315


>03_06_0572 +
           34812203-34812278,34812485-34813768,34813973-34814049,
           34814299-34814646
          Length = 594

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 400 TTLNLTPGMSPTAWPLRPNPATNTSS 323
           TT   TP M+P   P  P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,049,240
Number of Sequences: 37544
Number of extensions: 332801
Number of successful extensions: 976
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)