Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A24
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    27   0.52 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   1.6  
SPAC9E9.17c |||dubiuos|Schizosaccharomyces pombe|chr 1|||Manual        25   2.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   3.7  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   3.7  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    25   3.7  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    23   8.5  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    23   8.5  

>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 27.5 bits (58), Expect = 0.52
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 40  STTFSDIWFDEEGKPHHTILAIEIDIEGSDAEKDRLLAFLIYLK 171
           S  FS+ +F+  GK HH  +A   ++   +  K   L + I+LK
Sbjct: 198 SPYFSESYFETFGKMHHGWMAARANLSDPENRKYFDLGYQIFLK 241


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 235 LILFYLITLLYSEGFHLNTSAILNI 161
           + LFYL  L+ + GF LN+ + L I
Sbjct: 210 VFLFYLAGLIITSGFFLNSLSFLKI 234


>SPAC9E9.17c |||dubiuos|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = -2

Query: 241 IKLILFYLITLLYSEGFHLNTSAILNILKTPGDGLSLRLNLRCLFR*PISYGEVSLPHR 65
           + ++L  + + L ++  HLN S   ++++   +   L +N    +R  ++ GE+S+  R
Sbjct: 9   VGIVLGVVASSLCNKNNHLNRSREFSVIQKDEELNVLEINFNDFYRTTLNVGELSMSTR 67


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 193 FHLNTSAILNILKTPGDGLSLRLNLRCLFR 104
           FHL+ + ILN+L+  G      L  RC F+
Sbjct: 631 FHLSYNMILNLLRVEGISPEFMLE-RCFFQ 659


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 40  STTFSDIWFDEEGKPH 87
           ++T S  +FD EGKPH
Sbjct: 744 NSTRSKAYFDSEGKPH 759


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 295 LVNRLIDTYKTTLLCPLFIKLILFYLI 215
           L+NR     K    C  F+  +LFYLI
Sbjct: 204 LINRRSKQDKIIFYCGAFLVFVLFYLI 230


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 295 LVNRLIDTYKTTLLCPLFIKLILFYLIT 212
           +++R +DT+   L+C    KL+  ++ T
Sbjct: 656 ILSRTLDTFSDVLICERISKLLKNFIYT 683


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 91  TILAIEIDIEGSDAEKDRLLAFLIYLKSHSYL 186
           T  A + ++  SD+ +D    F+IYLK   YL
Sbjct: 629 TFGAFQSNLHLSDSWEDFQKNFIIYLKKKGYL 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,678
Number of Sequences: 5004
Number of extensions: 22709
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)